Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20sp._20JCM_2024511_20[genbank_20GCA_5F001600855.1_2020 16-03-01] 55 sequences; 28,180,937 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq18 102 1e-16 seq3 87.8 2e-12 >seq18 Length=823183 Score = 102 bits (112), Expect = 1e-16 Identities = 163/231 (71%), Gaps = 5/231 (2%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || ||||||||||| || |||| || || |||||||| || Sbjct 29472 TGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGGCCG 29531 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| ||||| | || || || |||||||||||||| || | Sbjct 29532 CGCTTCTTGAGCCAGAAGATCGAGGCGAACGAGCCGGAGAAGAAGATGCCCTCGACGGCG 29591 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAG-ACTTGTC---GAACCACTTGAGAGC 119683 || || |||| |||||||| || || || ||| | |||| || |||||||||||| Sbjct 29592 GCAAAGGCGATGAGACGCTCGGC-GAACGTGGAGCGCGTGTCGGTGATCCACTTGAGAGC 29650 Query 119684 CCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAG 119734 ||| |||||| || ||||| |||| || | |||||| ||||| || Sbjct 29651 CCATGCGGCCTTCTTCTGGATGCACGGGATGGTGTCGATGGCCTCGAACAG 29701 >seq3 Length=1717572 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 167554 AGGCGTGTACCAAATTGACCACATGGCTCGAGAAGATTGATGTTATTCGACCCCGTATAA 167613 || || |||||||||||||| || |||| | |||||||| || ||| | || Sbjct 32405 AGACGAGTACCAAATTGACCGTTAGGTGCGAGCAAGTTGATGTTGTTGCTTCCCACA-AA 32347 Query 167614 TCGTTG-GCCAACTTGACGATCGTTTCAGCGAGGGAAACTTCGCCGTGGTGGTAAGCACT 167672 | || ||||| || ||||| | | |||||| |||||||||||||| || | Sbjct 32346 GCTCTGCGCCAAACCCACAATCGTCGCCGTGAGGGACTGCTCGCCGTGGTGGTAGGCCGT 32287 Query 167673 CTTTTCAGCCACATATGCTGCCAACTGTGCAACCTTCATCTCATCTTTGAGATTCTTTTG 167732 ||| || | |||||| | |||| |||||| || || ||||| | |||| || | Sbjct 32286 CTTCTCCGACACATAACCAGCCAGCTGTGCCACTTTGATCTCCTTGGTGAGGTTGCGCTT 32227 Query 167733 GAAACATGAATACATAACCTTGCGTTGAGAAGGTTTGAGACCATCTGCCACG 167784 |||||| | ||| ||||| |||||| |||||| || ||||| || ||| Sbjct 32226 GAAACAACCAAACAAGACCTTTCGTTGACCAGGTTTCAGTCCATCGGCAACG 32175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975595079000