Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20sp._20JCM_2024511_20[genbank_20GCA_5F001600855.1_2020 16-03-01] 55 sequences; 28,180,937 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq18 120 4e-22 seq1 84.2 3e-11 >seq18 Length=823183 Score = 120 bits (132), Expect = 4e-22 Identities = 183/257 (71%), Gaps = 8/257 (3%) Strand=Plus/Plus Query 117260 TGAAGAGCTC-CACGGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTT 117318 |||||||| |||| |||| || |||||||||||| || || || || || || || Sbjct 29446 TGAAGAGCAAGCACG-CAAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTG 29504 Query 117319 GAGAAGCATAGGCCTGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGAC 117378 |||||| ||||| |||||||| || |||||||| | ||| | || | | ||| || Sbjct 29505 GAGAAGGTGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATCGAGGCGAACGAG 29564 Query 117379 CCGGAGAAGAAGATACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAA---GGAG 117435 |||||||||||||| ||||| || ||||| || | || ||||||||||| |||| Sbjct 29565 CCGGAGAAGAAGATGCCCTCGACGGCGGCAAAGGCGATGAGACGCTCGGCGAACGTGGAG 29624 Query 117436 CGAGACTTTGTGTCAAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACA 117495 || | | ||| | ||| || | |||||| |||||||||| || || || | Sbjct 29625 CGCGTGTCGGTG---ATCCACTTGAGAGCCCATGCGGCCTTCTTCTGGATGCACGGGATG 29681 Query 117496 GTTTGGATGGCTTCAAA 117512 || | |||||| || || Sbjct 29682 GTGTCGATGGCCTCGAA 29698 >seq1 Length=2178591 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 117313 TCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAG 117372 ||||| ||||| | ||| |||||||| ||||||||||||||||| | || || | Sbjct 1447981 TCATTCGAGAACGTCAAGCCCGGCATGAGCCCCCGCTTCTTCAACCAGAAGATGGCTGCG 1448040 Query 117373 AATGACCCGGAGAAGAAGATACCCTCCACACACGCAAACGC 117413 || ||||||||||| ||||| ||||| ||||| || || || Sbjct 1448041 AACGACCCGGAGAAAAAGATCCCCTCGACACAAGCGAAGGC 1448081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980394388200