Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20sp._20JCM_2024511_20[genbank_20GCA_5F001600855.1_2020 16-03-01] 55 sequences; 28,180,937 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq18 140 7e-28 seq5 122 2e-22 seq3 98.7 2e-15 >seq18 Length=823183 Score = 140 bits (154), Expect = 7e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| | |||||||||||| || ||||| || || || ||||| || | ||| || | Sbjct 46198 AGTCGGAGAACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGA 46257 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || |||||||||||||| || |||||||| || || || ||||| || || || || || Sbjct 46258 CCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGGATACCCTCC 46317 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||| || || || ||||||||| || |||||||| || || || || |||||| Sbjct 46318 TTGTCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCAGACGACTCGACCTCGAGGGTA 46377 Query 195103 ACCGTCTTTCCTGTCAA 195119 | |||||||| ||||| Sbjct 46378 ATGGTCTTTCCCGTCAA 46394 Score = 140 bits (154), Expect = 7e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || |||||||||||||| || ||||| |||| || |||| || ||||| Sbjct 46771 ACGAGGTGGAGGGTGGACTCTTTTTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCTTCC 46830 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||| || || |||||||||||||| || ||||| || ||||| || Sbjct 46831 AGCTGCTTGCCGGCGAAAATGAGACGTTGTTGGTCTGGCGGGATGCCCTCCTTGTCCTGG 46890 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| || || || ||||| || || || || || || | |||||| Sbjct 46891 ATCTTCGCCTTGACATTGTCGATCGTGTCGGACGACTCGACCTCGAGCGTGATCGTCTTG 46950 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || | || || ||||| | |||||| Sbjct 46951 CCCGTGAGGGTCTTGACGAAGATCTGCATT 46980 Score = 131 bits (144), Expect = 4e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| ||||| || || ||||| || || || ||||| |||| || || | ||||| || Sbjct 46998 AACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTC 47057 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||||||| || ||||| || || ||||| ||||| ||||| || || || ||||| || Sbjct 47058 GAGCTGCTTGCCGGCGAAAATCAGGCGTTGCTGGTCCGGAGGGATACCCTCCTTGTCCTG 47117 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || ||||||||| || || |||||||| || || || || || | ||||| Sbjct 47118 GATCTTGGCCTTGACGTTGTCGATCGTGTCCGACGACTCAACCTCGAGAGTGATGGTCTT 47177 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| ||| || ||||| | ||||| Sbjct 47178 GCCGGTCAGAGTCTTGACGAAAATCTGCAT 47207 Score = 127 bits (140), Expect = 5e-24 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || || || ||||| ||| || || || || || ||| Sbjct 45925 ACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTCCTTCCGTCCTCG 45984 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || |||||||| || || || || || ||||| || Sbjct 45985 AGCTGCTTGCCCGCGAAGATCAGACGCTGTTGGTCCGGGGGGATACCCTCCTTGTCCTGG 46044 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| || ||||||||||| ||| || || || ||||| | |||||| Sbjct 46045 ATCTTCGCCTTGACATTGTCAATGGTGTCAGAAGACTCGACCTCGAGGGTGATCGTCTTG 46104 Query 195112 CCTGTCAA 195119 || ||||| Sbjct 46105 CCGGTCAA 46112 Score = 116 bits (128), Expect = 8e-21 Identities = 118/154 (77%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 194963 TGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTT 195022 |||| || | ||| || | || || ||||||||||| || |||||||| || || || | Sbjct 47317 TGTAGTCAGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCT 47376 Query 195023 GGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCG 195082 |||| ||||| ||||| || ||||| || || || ||||||||| || |||||||||| Sbjct 47377 GGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCG 47436 Query 195083 AACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 || || ||||| ||||| | |||||||| || Sbjct 47437 AAGACTCGACTTCGAGGGTGATGGTCTTTCCGGT 47470 Score = 84.2 bits (92), Expect = 5e-11 Identities = 92/120 (77%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCT 194981 |||| | ||| ||||| || || ||||| || || || ||||| || | |||| || | Sbjct 46483 AGTCGGAGAACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGACAAG-GTGCG 46541 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 || || ||||||||||| || || |||||||| || || |||||||| |||||||| || Sbjct 46542 ACCGTCCTCGAGCTGCTTGCCGGCAAAGATAAGGCGCTGCTGGTCTGGCGGAATGCCCTC 46601 >seq5 Length=1498571 Score = 122 bits (134), Expect = 2e-22 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || || || ||||| || | || |||| || || ||| Sbjct 692055 ACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTTCGGCCGTCCTCG 692114 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || |||||||| || || || || || ||||| || Sbjct 692115 AGCTGCTTGCCCGCGAAGATCAGGCGCTGTTGGTCCGGGGGGATACCCTCCTTGTCCTGG 692174 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| || || |||||||| ||| ||||| || ||||| | |||||| Sbjct 692175 ATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATCGTCTTG 692234 Query 195112 CCTGT 195116 || || Sbjct 692235 CCCGT 692239 >seq3 Length=1717572 Score = 98.7 bits (108), Expect = 2e-15 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 194963 TGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTT 195022 |||| || | ||| || | || || ||||||||||| || ||||| || || || |||| Sbjct 192620 TGTAGTCCGAAAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATGAGACGCTGTT 192679 Query 195023 GGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCG 195082 |||| || || || || || ||||| || || || ||||||||| || |||||||||| Sbjct 192680 GGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCG 192739 Query 195083 AACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | ||||| || ||||| | ||||| || || Sbjct 192740 AGGACTCCACCTCGAGGGTGATGGTCTTCCCGGT 192773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109480818162185