Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20sp._20JCM_2024511_20[genbank_20GCA_5F001600855.1_2020 16-03-01] 55 sequences; 28,180,937 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq10 113 4e-20 >seq10 Length=1243995 Score = 113 bits (124), Expect = 4e-20 Identities = 202/292 (69%), Gaps = 11/292 (4%) Strand=Plus/Plus Query 29694 GTAACCCTCCAGGGAGAAATCCTCTGCCTTAAAGTCGTCCAGGT------TCTCCACCCT 29747 ||| ||||||| | ||| ||||||| | | || |||| | || ||||| || | Sbjct 823061 GTATCCCTCCACGACGAAGTCCTCTGTCCTGAACCCGTCGATGTCCCCGATCTCCTCCTT 823120 Query 29748 ---CCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAG 29804 |||| | | | || ||||| || | |||||| |||||||||||| || || Sbjct 823121 GGTCCTGGCAAACTTGAGAGTGGGGAACTCGCGGGGCTCTCTCTCGAGCTGAACCTGGAG 823180 Query 29805 CGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTC-TCCCG 29863 ||| ||||| || ||| ||||||||| ||||| |||| | ||| ||||| | Sbjct 823181 CGGCTCCACATGGTCCTTGTAGACGTGCGCGTCGCCCATCTGGAGGATGAACTCGTGTGC 823240 Query 29864 GTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAA 29923 || ||||| || ||| | || ||||||| ||||||||| ||||| ||||||||| | Sbjct 823241 GTCACAGCCC-GTCACGAGGGCGATCATGTGCGTGAGGAGCGAGTACGAGGCGATGTTGA 823299 Query 29924 AGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAG 29975 | || || ||||| || | ||| | ||| | ||| || | | | || ||||| Sbjct 823300 AAGGGACGCCGAGACCGAGGTCGCACGAGCGCTGATACATCAGGCAGGAGAG 823351 Score = 111 bits (122), Expect = 1e-19 Identities = 230/337 (68%), Gaps = 4/337 (1%) Strand=Plus/Plus Query 30043 TTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCC 30102 || ||||||||||| | | || ||| |||||||| || || ||| |||| || Sbjct 823604 TTCGGGTTCCAGGCAGAGAGGACGATCCGCCTGTCGGTCGGATTATTCTTGATCTTATCA 823663 Query 30103 ACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCC-CTCATGTCCGTGTA 30161 | | | || ||||||||| || | |||| || || | | || |||| || Sbjct 823664 ATCACCTGGGCCAACTGATCCACTCCTTTGCCCGTATAATCATCTTCACACGTCCCA-TA 823722 Query 30162 CTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCT 30221 || || ||||||||||||||||||||||| ||||| ||||| || || || || || Sbjct 823723 ATCCGCCCCGAAATGCCTCCACTGGAACCCATACACGGGTCCGAGATCGCCTTCCCTCCG 823782 Query 30222 GTGCTCGAAGCCCCTCTTG-TCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTA 30280 || | || ||| | | || | | || || || |||||| | |||||||| || | Sbjct 823783 ATGACCCAA-CCCGACGCGATCGAGGTACTCCCTCGACCCGTTGCCTTCCCAGATATTGA 823841 Query 30281 CCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCT 30340 |||||| ||||| || ||||| || ||| | || ||||||||||| ||||||| Sbjct 823842 TCCCCTTGTCGGACAGGACTTTGCCGTCCGTGCAGCCCGCCACGAACCACAGGAGCTCCT 823901 Query 30341 CCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAG 30377 | || || || | ||||| | |||||| ||||| Sbjct 823902 CTACCACTCCCCGCAGGAAGACGCGCTTGGTGGTGAG 823938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408617326098515