Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20sp._20JCM_2024511_20[genbank_20GCA_5F001600855.1_2020 16-03-01] 55 sequences; 28,180,937 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq14 356 4e-93 seq18 163 5e-35 >seq14 Length=977059 Score = 356 bits (394), Expect = 4e-93 Identities = 1270/1971 (64%), Gaps = 47/1971 (2%) Strand=Plus/Minus Query 212703 GACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATCTCTCTGG 212762 |||| ||||||||| || || | | | ||| ||||| | ||| |||| | | ||| Sbjct 769453 GACTCACTCTGGTCGATAAAGGCACCACGGTCCGCGGCGAGGTCAATGACCGCCTTTTGG 769394 Query 212763 GAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTC 212822 || | |||||| || |||||| |||| | ||||| || | |||| || || | |||| Sbjct 769393 GAAATCTCCCAGACCGTCTTGTAGATCGCCTTGAGCTCTGCGGGGATGCTCGGAACGTTC 769334 Query 212823 TGCACAGACCC-CCTGTGT--ATGGTCAGCTGCAGGCGCATGTCCTCGTTCCAGAGGCCC 212879 || | || || || | | ||| | || | | ||||| ||||| |||||| || Sbjct 769333 TGGATCGAGCCGCCCGCGGCGATGATGAGGTTCTT---CATGTTCTCGTCCCAGAGACCG 769277 Query 212880 CTGGTCTCCAGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACC 212939 | | || || || ||| || | |||||||||||| |||||||| Sbjct 769276 AGGTTGATGAGATCGCGGAGCAACCAGGGGCAAACGACCTGGAAGTCACCAGAGAGCACA 769217 Query 212940 CTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGT 212999 | | ||| | | || ||||||||||||| || |||||| ||| || ||||| Sbjct 769216 CGGCGGGCGTACAGCATCGAGGTGTAGGGCTCGAAGCACTCGTTCCACCCGAGGATCTGC 769157 Query 213000 GCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCG 213059 | || ||| |||||||| || || || ||||| ||| | || ||||||| | Sbjct 769156 GAGGTCGAGGCGGTGGGCATCGGCGCGACGAGGAGCGAGTTGCGGACACCGTGCTGCTTG 769097 Query 213060 ATGAGGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTC 213119 ||| || || ||||||||||| | | | | || | || || | Sbjct 769096 ATGTTCTCGCGGAGAGGAGCCCAGTCCCAGAGGTCGGTCGGGACG-CGGCC--------C 769046 Query 213120 CACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGG 213179 |||| ||| ||| | || || ||| | ||| ||||| ||| | ||| | Sbjct 769045 CACAGGTCGGGCTGGAGGAGACCCTTGGAGATGGGCGAGCCCTCGTAGGTCTCGTACTTG 768986 Query 213180 CCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAAT 213239 ||| ||||| ||| |||||||| ||||||| || || |||| |||||| || || || Sbjct 768985 CCAAACTCCTGGGCGAGCTCGCACGACGCCTCGAGAGCGGCGTGGTAGATCGTCTCGAAG 768926 Query 213240 ATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCAT-GCGTTGGAA 213298 |||| ||||||||| ||| | || || ||| ||||| || || | || Sbjct 768925 ATCTGGATGTTGAGCTCGCGGGCGGCGGGCGAGTCGAACGGCATGCGCAGAGCCATA-AA 768867 Query 213299 CACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGA 213358 |||| || || |||||||| |||| ||||| || | ||| | || ||| || ||| Sbjct 768866 GGCATCGGCGAGACCCTGGACACCGAGGCCGACAGGGCGGTGACGCATGTTCGAGTTGCG 768807 Query 213359 GCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCAC 213418 | ||||| | ||||| |||||| | ||||| | ||| |||||| |||| | || Sbjct 768806 GGCCTCCTTGACAGGGTAGTAGTTGCGGGTGATGACCGTGTCGAGGTTCTTGGTGACGAC 768747 Query 213419 TTTGGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCA------C 213472 || |||| | | || | || |||| ||||| ||| | || || | Sbjct 768746 CTTTGTGATCTCGTGGAGCTTCT------TGAAGTCGTAGACCCTGCGCTCCATGTCGAC 768693 Query 213473 AAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTA 213532 |||| | || ||||||| ||| |||||||| ||||| ||||| | | | | | ||| Sbjct 768692 AAACGCGGGGAGGGCGAGCGAGGCGAGGTTGCAGACGGCGACCTCGTCGGGGGCAGAGTA 768633 Query 213533 CTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGA 213592 ||| |||||||||||||| |||||| | ||||||||| |||| ||| ||||| || Sbjct 768632 CTCGATGATCTCGGTGCAGAGGTTGGACGACTTGATGGTGCCGAGGTGCTGCTGGTTGGA 768573 Query 213593 CTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACAC 213652 |||||||||||| | ||||||||||||||| ||||| |||||||| ||||| | | Sbjct 768572 CTTTGCGTTGGCGGCGTCCTTGTAGAGCATGAAGGGGCCACCGGTCTCGGTCTGGGCCTC 768513 Query 213653 CAGTATCTGGC--TCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTA 213710 || | |||| |||||| | | ||||||| | | | ||| | | ||| | Sbjct 768512 GAGGA--TGGCAAACCAGAGCTTCTGCGCCTTGATCGTCTTGC-GACCCTTGCCGGCCT- 768457 Query 213711 GCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGA 213770 |||||| |||||||||| | || | || ||| || | | || || || Sbjct 768456 -GCTCGTAGCTCTCGTAGAGCTTCTCAAACTGGTCGCCGTGCACGTCGGCGAGGCCGGGG 768398 Query 213771 CAGGATGCGGGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGG 213830 || ||||| |||||||| ||||||| ||||| | ||| | || |||||| ||| Sbjct 768397 CACTCGGCGGGGCACATGAGCGTCCAGTCGCCGTCGGCCTCGACGCGCTTCATGAAGAGG 768338 Query 213831 TCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTT 213890 |||| || ||| || ||| ||||||||| | || | || ||| || ||| Sbjct 768337 TCCGAGATCCAGAGGGCGTAGAACAGGTCACGGGCGCGGACTTCCTCCTTGCCGTGGTTC 768278 Query 213891 TTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAG 213950 || | || || || ||||| |||||||| |||||||| ||||| | |||||| |||||| Sbjct 768277 TTCCTGAGGTCGAGGAAGTCGAAGATGTCGGCGTGCCAAGGCTCGAGGTAGATCGCAAAG 768218 Query 213951 GCGCCCG---GCCTCTTGCCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGC 214007 || || | || | ||||| |||||||| || | ||| || | | ||| Sbjct 768217 GCACCGGGACGCTTGTTGCCACCCTGGTCGACGTAGCGGGCAGTGGCGTCGTACGCGCGG 768158 Query 214008 AGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCC 214067 || | || || | ||||| || | |||||||| || || || || ||||| ||| Sbjct 768157 AGCATCGGGACGATACCGTTCGAGTAACCGTTGGTACCGGCGATGTAGGAGCCCTTGGCG 768098 Query 214068 CTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGC 214127 | | |||| ||| || || || ||||||||| ||| |||||| ||||| | Sbjct 768097 CGGATGTTGTGGATGTGAAGACCGATACCACCGGCGGTCTTTGAGATCTGAGCGCACGTC 768038 Query 214128 CTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTC 214187 | | ||||| ||| ||| | || ||| || | | | | | |||||| | Sbjct 768037 TTGAGCGTCTCGTAGATCCCGTCAATCGAGTCGTCCCTCATGGCGACGAGGAAGCACGAC 767978 Query 214188 GAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAAC 214247 || | |||||| ||| || ||| | |||||| |||||||| ||| || | | | Sbjct 767977 GACATCTGGGGGTTGGGCGTGCCGGCGTTGAAGAGCGTGGGCGAGGCGTGAGTGAAGTAT 767918 Query 214248 TTGTTAGAGAGGAGCCTGTAGGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGT 214307 | || | ||| |||| ||||| | ||| | ||||| | |||||| Sbjct 767917 CGCTCCGACATGAGGTTGTACGTCTCGATGACCTTGTCGATGTTGGATCCGTGGATACCG 767858 Query 214308 AGAGCGCACCTCATCAGCATGTGCTGGGGCCTCT---CTATGGGTCCTTTGGGGCCCTTG 214364 | ||| | ||| | |||||||||||| | || | || || ||| || | Sbjct 767857 ACGGCGACACGCATGATCATGTGCTGGGGTCGCTCGACAATCTTGCCGTTGATGC---GG 767801 Query 214365 AGCAGGTAGGAGCGCTCCAGAGTCTTGAACCCAAAGTAGGAGTAGGTATGATCGTTCCCG 214424 || ||||| || ||||| || |||||||| ||||||||| ||| | | ||| || Sbjct 767800 AGGAGGTACGACCGCTCGAGCGTCTTGAAGCCAAAGTAGTTGTACGCAAAGTCGCGGTCG 767741 Query 214425 TGTATGAGGGCAGCGTCCAGCTCTTCCGCGTGCTCTTGGCTCAGCTTGAAAATCTCGTCC 214484 | |||| |||| ||| || | ||| || || | | |||| | | ||||| Sbjct 767740 TAGATGATGGCACTGTCGAGAACGTCCTTGTTGTCCATGACGATCTTGTAGACGTCGTCG 767681 Query 214485 GAGATCAAGGGAGCCTCCACGTCCAAGTCCGGGTTAATGTTTTTCCAGAGCTTTTCGCAT 214544 | ||||| ||| || | | | || | ||||| || | | || || || Sbjct 767680 GCGATCATGGGCGCGTGCTTGCCCGTCTTGGGGTTGATCCAGTGGTACAG-GTTGGACAC 767622 Query 214545 GTC-TTTGAGAACTCCGGGACGGTCTGCAGGTGCAGGTTGGACACCGAGACCTTGGCAGC 214603 | | | |||||| || | | |||| | |||||||||||| | | || ||| || Sbjct 767621 GACGGTGGAGAACGCCTTGTCCGTCTCCTTGTGCAGGTTGGAGATGGCGATACGGGCGGC 767562 Query 214604 CAGGAGCCCGTAGTTTGGGTGCTTGGTGGTCATGCTGGCCGCGGTGTGAGC 214654 |||| |||||| |||||||||||||| | | || ||||| | ||| Sbjct 767561 GAGGATGGCGTAGTCGGGGTGCTTGGTGGTGAGGTACGCGGCGGTTTCAGC 767511 >seq18 Length=823183 Score = 163 bits (180), Expect = 5e-35 Identities = 188/253 (74%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 48123 AGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGA 48182 |||||| ||| |||||||| |||| | || ||||| || ||||||| ||||||||| Sbjct 29449 AGAGCAAGCACGCAAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGA 29508 Query 48183 AGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAG 48242 || ||| || ||||||| || | || ||||||||||| || | ||||| ||||| | Sbjct 29509 AGGTGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATCGAGGCGAACGAGCCGG 29568 Query 48243 AGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCT 48302 |||||||||||||||| || || || || ||| |||| | ||| |||| | | | | Sbjct 29569 AGAAGAAGATGCCCTCGACGGCGGCAAAGGCGATGAGACGCTCGGCGAACGTGGAGCGCG 29628 Query 48303 TGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTA 48362 |||| | |||||| || ||||| | |||||||||| |||||| || || || || | Sbjct 29629 TGTCGGTGATCCACTTGAGAGCCCATGCGGCCTTCTTCTGGATGCACGGGATGGTGTCGA 29688 Query 48363 TGGCCCGGAAGAG 48375 ||||| ||| || Sbjct 29689 TGGCCTCGAACAG 29701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532159571200