Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20sp._20JCM_2024511_20[genbank_20GCA_5F001600855.1_2020 16-03-01] 55 sequences; 28,180,937 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq14 349 6e-91 seq18 170 4e-37 seq1 91.5 3e-13 >seq14 Length=977059 Score = 349 bits (386), Expect = 6e-91 Identities = 969/1464 (66%), Gaps = 43/1464 (3%) Strand=Plus/Minus Query 221406 CGCAAGACTGCGTC-AGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTC 221464 |||| ||| || || || || ||||||||||| ||||| |||||| ||||||| ||| Sbjct 768966 CGCACGAC-GCCTCGAGAGCGGCGTGGTAGATCGTCTCGAAGATCTGGATGTTGAG-CTC 768909 Query 221465 TTGGCCT-CGGGAGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTG 221523 || | |||| || ||| ||||| ||||| | |||| | ||||| || ||||| Sbjct 768908 GCGGGCGGCGGGCGAGTCGAACGGCATGCGCAGAGCCATAAAGGCATCGGCGAGACCCTG 768849 Query 221524 TACTCCGATACCGATGGGCCTGTGTCTCCTGTTGGAA--GCGGCCGCTTCTGGCACGGGA 221581 || |||| |||| || | ||| | | |||| || |||| | || || | || || Sbjct 768848 GACACCGAGGCCGACAGGGCGGTGACGCATGTTCGAGTTGCGGGC-CTCCTTG-ACAGGG 768791 Query 221582 TAAAAGTTGACGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTC 221641 || ||||| | ||| | ||| ||||||| |||| ||| || | |||| Sbjct 768790 TAGTAGTTGCGGGTGATGACCGTGTCGAGGTTCTTGGTGACGACCTTTGTGATCTCGTGG 768731 Query 221642 AGCTTCTGGTGATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTT 221701 ||||||| | | | | ||| | || || | || ||||| ||| Sbjct 768730 AGCTTCTTGAAGTCGTAGACC------CTGCGCTCCATG------TCGACAAACGCGGGG 768683 Query 221702 AGGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATC 221761 ||||| | ||| ||||| || ||||| |||||||| | | |||| |||||| Sbjct 768682 AGGGCGAGCGAGGCGAGGTTGCAGACGGCGACCTCGTCGGGGGCAGAGTACTCGATGATC 768623 Query 221762 TCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTT-GCGATT 221820 || || ||||||||| |||||||||| || ||||| | || || ||||| ||| || Sbjct 768622 TCGGTGCAGAGGTTGGACGACTTGATGGTGCCGAGGTGCTGCTGGTTGGACTTTGCG-TT 768564 Query 221821 GGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTT 221880 ||| ||||||||||||||||| ||||| || || ||||| ||| ||| | || || Sbjct 768563 GGCGGCGTCCTTGTAGAGCATGAAGGGGCCACCGGTCTCGGTCTGGGCCTCGAGGATGGC 768504 Query 221881 GTCCCAGAGTTCTCTGGCGCTCACCGTCCTCTTGACTGCACCCT---CGGTCTTTTCATA 221937 |||||| | |||| ||| | || ||||| ||||| ||| || || || Sbjct 768503 AAACCAGAGCT-TCTG-CGC-CTTGATCGTCTTGCG---ACCCTTGCCGGCCTGCTCGTA 768450 Query 221938 CCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGC 221997 | |||||| | ||||||| || |||| | | ||| | ||||| || ||| ||| Sbjct 768449 GCTCTCGTAGAGCTTCTCAAACTGGTCGCCGTGCACGTCGGCGAGGCCGGGGCACTCGGC 768390 Query 221998 GGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGAT 222057 ||| ||||| || |||||| || | | | ||| | || |||||||||||||| ||| Sbjct 768389 GGGGCACATGAGCGTCCAGTCGCCGTCGGCCTCGACGCGCTTCATGAAGAGGTCCGAGAT 768330 Query 222058 CCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAG 222117 ||| || || | || || || | || || |||||| ||||| ||| ||||| || Sbjct 768329 CCAGAGGGCGTAGAACAGGTCACGGGCGCGGACTTCCTCCTTGCCGTGGTTCTTCCTGAG 768270 Query 222118 ATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGG 222177 || | || || || ||||| |||||||| ||||| || |||| || | || ||||| Sbjct 768269 GTCGAGGAAGTCGAAGATGTCGGCGTGCCAAGGCTCGAGGTAGATCGCAAAGGCACCGGG 768210 Query 222178 TCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGG 222237 ||||||||||||||||| || || | | |||| | | ||| || |||| Sbjct 768209 ACGCTTGTTGCCACCCTGGTCGACGTAGCGGGCAGTGGCGTCGTACGCGCGGAGCATCGG 768150 Query 222238 TACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTT 222297 || | ||||| || ||||||||| || ||||| | || ||| | | ||| Sbjct 768149 GACGATACCGTTCGAGTAACCGTTGGTACCGGCGATGTAGGAGCCCTTGGCGCGGATGTT 768090 Query 222298 ACTGGCAGACATG-CCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAG 222356 ||| | | | ||||||||||||||| || |||||| ||||| ||||||| | Sbjct 768089 -GTGGATGTGAAGACCGATACCACCGGCGGTCTTTGAGATCTGAGCGCACGTCTTGAGCG 768031 Query 222357 TGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCT 222416 | || ||| || || || ||||| ||| | | | | || || || |||||||||| Sbjct 768030 TCTCGTAGATCCCGTCAATCGAGTCGTCCCTCATGGCGACGAGGAAGCACGACGACATCT 767971 Query 222417 GAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAG 222476 | | |||| | | |||||| || |||||||| |||||| || ||||| | | | Sbjct 767970 GGGGGTTGGGCGTGCCGGCGTTGAAGAGCGTGGGCGAGGCGTGAGTGAAGTATCGCTCCG 767911 Query 222477 ACATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGC 222536 |||| || | ||||||||| | ||| || |||||||| ||||| || | |||| Sbjct 767910 ACATGAGGTTGTACGTCTCGATGACCTTGTCGATGTTGGATCCGTGGATACCGACGGCGA 767851 Query 222537 ATCTCATGTACATGTACTGGGGCCTCTCCACAGGACCCT--TGGAGCTGGAGAGCAGGTA 222594 | |||| ||||| |||||| | ||| ||| | | | | | || ||| ||||| Sbjct 767850 CACGCATGATCATGTGCTGGGGTCGCTCGACA--ATCTTGCCGTTGATGCGGAGGAGGTA 767793 Query 222595 CGATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCAC 222654 ||| || || |||||||| |||||||||||| ||||||| | | ||| | | Sbjct 767792 CGACCGCTCGAGCGTCTTGAAGCCAAAGTAGTTGTACGCAAAGTCGCGGTCGTAGATGAT 767733 Query 222655 GGCGGCGTCCAG---CTCCGACTTGTGCTTTACGCTCAACTCGAAAAAGCGCTCAGACAC 222711 ||| ||| || ||| |||| | | ||| | || | | | | || | | Sbjct 767732 GGCACTGTCGAGAACGTCCTTGTTGTCCATGACG---ATCTTGTAGACGTCGTCGGCGAT 767676 Query 222712 GAGGGGAGCGTTCTCTTTGGTGTCGGGGTTAACGTTGTGGTACAGCTGCCACATGGCATC 222771 | ||| |||| || || | |||||| | ||||||||| | ||| | | Sbjct 767675 CATGGGCGCGTGCTTGCCCGTCTTGGGGTTGATCCAGTGGTACAGGTTGGACACGACGGT 767616 Query 222772 AGAGAACGTGTCGGGAGTCTGCTTGTGCAGATTCGACACGGCGATCCGAGACGCCAAGAT 222831 ||||||| | | |||| ||||||||| || || | |||||| || | || | ||| Sbjct 767615 GGAGAACGCCTTGTCCGTCTCCTTGTGCAGGTTGGAGATGGCGATACGGGCGGCGAGGAT 767556 Query 222832 ACCATAGTCAGGGTGCACGGTGGT 222855 | ||||| |||||| |||||| Sbjct 767555 GGCGTAGTCGGGGTGCTTGGTGGT 767532 >seq18 Length=823183 Score = 170 bits (188), Expect = 4e-37 Identities = 239/335 (71%), Gaps = 3/335 (1%) Strand=Plus/Minus Query 25786 CTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAG 25845 ||||| | |||||||| ||| || ||||| ||| |||||| ||||| | ||| Sbjct 29701 CTGTTCGAGGCCATCGACACCATCCCGTGCATCCAGAAGAAGGCCGCATGGGCTCTCAAG 29642 Query 25846 TGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAG 25905 ||||||| | | | || | ||||| | |||||| || | |||||||| || || ||| Sbjct 29641 TGGATCACCGACACGCGCTCCACGTTCGCCGAGCGTCTCATCGCCTTTGCCGCCGTCGAG 29582 Query 25906 GGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATG 25965 |||||||| ||| ||| ||||| || | ||||||||||||||| || || |||| Sbjct 29581 GGCATCTTCTTCTCCGGCTCGTTCGCCTCGATCTTCTGGCTCAAGAAGCGCGGCCTCATG 29522 Query 25966 CCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTT 26025 ||||| || ||| ||||||||||||||| | |||||||||||||||| || ||| Sbjct 29521 CCCGGCCTCACCTTCTCCAACGAGCTCATCTCGCGTGACGAGGGTCTCCACACCGACTTT 29462 Query 26026 GCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAGAGACCGTCTACAGT 26085 || ||| |||||| ||| |||| | | || | ||| | || || || || Sbjct 29461 GCGTGCTTGCTCTTCAC---CCACCTCCGCCGAAGGCCTCACCCGGACACGATCGCCAAG 29405 Query 26086 ATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTT 26120 |||||| ||||| || |||| ||| ||||||| Sbjct 29404 ATCATCCGCGAGGCGGTCAAGATTGAGCAGGAGTT 29370 >seq1 Length=2178591 Score = 91.5 bits (100), Expect = 3e-13 Identities = 101/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 25879 CGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATC 25938 || || || ||||| ||| ||| ||||| ||||||||| ||| ||||| || |||||| Sbjct 1448090 CGACTCGTCGCCTTCGCTTGTGTCGAGGGGATCTTTTTCTCCGGGTCGTTCGCAGCCATC 1448031 Query 25939 TTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTAC-TTTTCCAACGAGCTCATCAG 25997 |||||| | ||| || |||| |||| ||||||| || || || || ||| | ||||| Sbjct 1448030 TTCTGGTTGAAGAAGCGGGGGCTCATG-CCGGGCTTGACGTTCTCGAATGAGTTGATCAG 1447972 Query 25998 CAGGGACGAGGG 26009 |||||||||| Sbjct 1447971 TCGGGACGAGGG 1447960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844161419200