Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20sp._20JCM_2024511_20[genbank_20GCA_5F001600855.1_2020 16-03-01] 55 sequences; 28,180,937 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq18 120 4e-22 seq1 84.2 3e-11 >seq18 Length=823183 Score = 120 bits (132), Expect = 4e-22 Identities = 183/257 (71%), Gaps = 8/257 (3%) Strand=Plus/Minus Query 64990 TTTGAAGCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGG 65049 || || |||||| | || | || || || |||||||||| |||||| | || ||| Sbjct 29698 TTCGAGGCCATCGACACCATCCCGTGCATCCAGAAGAAGGCCGCATGGGCTCTCAAGTGG 29639 Query 65050 TTTGACACAAAGTCTCGCTCC---TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAG 65106 | ||| | | |||||| ||||||||||| || | || ||||| || ||| Sbjct 29638 AT---CACCGACACGCGCTCCACGTTCGCCGAGCGTCTCATCGCCTTTGCCGCCGTCGAG 29582 Query 65107 GGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATG 65166 || |||||||||||||| || ||| | | || | ||| | |||||||| || |||||| Sbjct 29581 GGCATCTTCTTCTCCGGCTCGTTCGCCTCGATCTTCTGGCTCAAGAAGCGCGGCCTCATG 29522 Query 65167 CCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTT 65226 || ||||| |||||| || || || || || || || |||||||||||| || ||| Sbjct 29521 CCCGGCCTCACCTTCTCCAACGAGCTCATCTCGCGTGACGAGGGTCTCCACACCGACTTT 29462 Query 65227 GCCGTG-GAGCTCTTCA 65242 | |||| |||||||| Sbjct 29461 G-CGTGCTTGCTCTTCA 29446 >seq1 Length=2178591 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 65089 GCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTG 65148 || || || ||||| ||||| ||||| ||||||||||| ||| || || | |||||| Sbjct 1448081 GCCTTCGCTTGTGTCGAGGGGATCTTTTTCTCCGGGTCGTTCGCAGCCATCTTCTGGTTG 1448022 Query 65149 AAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 ||||||||||| |||||||| ||| | ||||| ||||| Sbjct 1448021 AAGAAGCGGGGGCTCATGCCGGGCTTGACGTTCTCGAATGA 1447981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569189858400