Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20sp._20JCM_2024511_20[genbank_20GCA_5F001600855.1_2020 16-03-01] 55 sequences; 28,180,937 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq2 452 5e-122 seq18 183 4e-41 seq5 149 8e-31 seq3 113 6e-20 seq14 87.8 2e-12 >seq2 Length=1957745 Score = 452 bits (500), Expect = 5e-122 Identities = 1010/1510 (67%), Gaps = 15/1510 (1%) Strand=Plus/Plus Query 195374 AATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATAATGAACGTCTC 195433 || ||||| || ||||| || || || || ||||| ||||| | || ||| |||||| Sbjct 1283408 AACGACCAGGGTAACCGAACGACCCCTTCCTACGTCGCCTTCAACGACTCTGAGCGTCTC 1283467 Query 195434 GTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTGTCTTTGACGCG 195493 | || |||||||| || || ||| || |||||||| ||| || || || ||||| Sbjct 1283468 ATCGGCGATGCCGCCAAGAACCAGGTCGCCATGAACCCGTACAACACGGTGTTCGACGCC 1283527 Query 195494 AAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGATATAAAGGACTGG 195553 |||||||| ||||| ||||||||| | || | ||||| ||| || ||| ||||| Sbjct 1283528 AAGCGTCTCATTGGCCGCAAGTTTGCCGACGCCGAGGTCCAGTCCGACATGAAGCACTGG 1283587 Query 195554 TCTTATGAAGTTGTTC--CCGGTGTGGCTGATAAGCCTATGATTAATGTTGAATTTCACG 195611 | | | ||| | || | | | ||| ||||| |||| | || || | | | Sbjct 1283588 CCCT-TCAAGGTCATCGACAAGGGCGGC----AAGCCCGTGATCGAGGTCGAGTACCGAG 1283642 Query 195612 GTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGG 195671 | |||| || || || ||||||| || || ||||| ||||| | | |||||||||| Sbjct 1283643 GGGAGACCAAGCAGTTCACTCCCGAGGAGATCTCGTCCATGGTCCTCCTCAAGATGAAGG 1283702 Query 195672 AGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTT 195731 |||| || || | | | | ||| || || | | || || || || || ||||| | Sbjct 1283703 AGACCGCCGAGGCCTACCTCGGTGGCACCGTCACCAAGGCCGTCGTCACCGTCCCTGCCT 1283762 Query 195732 ACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACT 195791 |||||| || || || || ||||| || |||||||| | || || ||||||| || Sbjct 1283763 ACTTCAACGACTCGCAGCGTCAGGCCACCAAGGACGCCGGTGTCATCTCGGGTCTCGACG 1283822 Query 195792 GTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACA 195851 || | || ||||| || || || || || || || || || ||||| |||||||| Sbjct 1283823 TCCTCCGTATCATCAACGAGCCCACCGCCGCCGCCATCGCCTACGGTCTCGACAAGAAGG 1283882 Query 195852 AGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCAC 195911 | || || || || || | ||||| || ||||||||||||||||| |||||||| | Sbjct 1283883 GCGCCGGCGAGAAGAACGTTCTCATCTTCGACCTCGGTGGTGGTACGTTCGATGTCTCGC 1283942 Query 195912 TTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAG 195971 | |||| ||||| | || || ||||| || ||||| || || ||||| || ||||| | Sbjct 1283943 TCCTCACCATTGAGGAGGGCATCTTCGAGGTCAAGGCCACCGCCGGTGACACCCATCTCG 1284002 Query 195972 GTGGTGAAGATTTCGATGCACGTCTTCTCCGTCA-TTTGTCTGATGAGTTCCGTCGAAAG 196030 ||||||| || || || ||||| || || |||||| | |||||| || ||| Sbjct 1284003 GTGGTGAGGACTTTGACAACCGTCTCGTCAACCACTTTGTC-CAGGAGTTCAAGCGCAAG 1284061 Query 196031 AATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGTCGGCTTAGGACTGCATGTGAA 196090 || ||||| || | ||| || | | ||||| ||||| || | || || ||||| Sbjct 1284062 AACAAGAAGGACCTCTCTTCCAACGCCCGCGCTCTCCGTCGTCTCCGAACCGCCTGTGAG 1284121 Query 196091 CGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGTTGAGATTGATTCGTTGTTT 196150 |||||||| ||||| |||||||| | || || || | | ||||| || ||| | || Sbjct 1284122 CGTGCCAAGCGAACCCTCTCTTCCGCCGCCCAGACCTCGATCGAGATCGACTCGCTCTTC 1284181 Query 196151 GACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTTGAAGAGTTAAACTCTGAT 196210 ||||| || |||||||| || | || |||||||| || || || ||| | | || Sbjct 1284182 GACGGCATCGACTTCTACACCTCGATCACCCGTGCCCGATTCGAGGAGCTCTGCCAGGAC 1284241 Query 196211 TTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGTGACGCAAAGATGGATAAG 196270 | || | ||||| || || || | || || || ||| | ||||| || ||| Sbjct 1284242 CTCTTCCGCTCCACCATGGAGCCCGTCGAGAAGGTCCTCCGCGACTCCAAGATCGACAAG 1284301 Query 196271 TCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGTATTCCGAAGATTCAACAG 196330 || ||| | || |||||||| || || || || |||||||| || ||||| || || Sbjct 1284302 TCGTCGGTCCACGAGATTGTCCTCGTCGGTGGTTCCACCCGTATCCCCAAGATCCAGAAG 1284361 Query 196331 ATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAACGATCAACCCGGATGAAGCA 196390 | | || | | ||| | | || |||| |||||||||| || || || Sbjct 1284362 CTCGTCTCGGACATGTTCTCTGGTCGCGAGCCCAACAGGTCGATCAACCCCGACGAGGCC 1284421 Query 196391 GTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTGTTGACA---ATAATAAC 196447 || || || ||||| ||||| ||||| || || ||| | || |||| | | Sbjct 1284422 GTCGCGTACGGTGCCGCCGTCCAGGCCGCCATCCTCACCGG---CGACACGTCCGAGGCC 1284478 Query 196448 GTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTCTTGAAACAGCGGGT 196507 ||| || || || || || || || || || | ||| ||||| | || || || || Sbjct 1284479 ACCCAGGACCTGCTCCTCCTCGACGTCGCCCCTCTCTCCATGGGTATCGAGACCGCTGGC 1284538 Query 196508 GGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACTAAGAAGGAACAAGTC 196567 ||| | |||||| | || | | ||||| || | || || |||||| | || Sbjct 1284539 GGTATCATGACTCCTCTGATCAAGCGCAACACCACCGTCCCCACCAAGAAGTCTGAGATC 1284598 Query 196568 TTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTATATGAAGGAGAACGC 196627 || || || || || || || || || ||||| | || || || || || || || || Sbjct 1284599 TTCTCCACCTACTCTGACAACCAGCCCGGTGTCCTCATCCAGGTCTACGAGGGCGAGCGT 1284658 Query 196628 TCCCGTGCAAAGGATAACCATCTACTTGGAACTTTCGATTTGACGGGGATTCCAGCTGCA 196687 || ||||||| | | || || || | ||||| | || || || || | ||| Sbjct 1284659 GCCAAGACAAAGGACTGCAACCTCCTCGGCAAGTTCGAGCTCACCGGCATCCCCCCCGCA 1284718 Query 196688 CCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGCAAATGGAATTCTAAAC 196747 ||| | ||||| || ||||| | || | ||||| | ||||| || || || || ||| Sbjct 1284719 CCCCGTGGTGTCCCCCAGATCGAGGTCTCGTTCGACGTCGACGCCAACGGTATCCTCAAC 1284778 Query 196748 GTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGTGATTACCAATGACAAG 196807 || | || | |||||| | | || || || ||||| || ||||| |||||| Sbjct 1284779 GTTTCCGCCGCCGACAAGACGACCGGAAAGTCGTCCAAGATCACCATCACCAACGACAAG 1284838 Query 196808 GGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGATGCGGAAAAGTACAGGGAA 196867 || || || || |||||||| ||||| || ||| | || || || ||||||| || Sbjct 1284839 GGTCGTCTCTCCAAGGAGGAGATTGAGCGCATGCTCGCCGAGGCCGAGAAGTACAAGGCC 1284898 Query 196868 GAAGACGAGG 196877 || ||||||| Sbjct 1284899 GAGGACGAGG 1284908 >seq18 Length=823183 Score = 183 bits (202), Expect = 4e-41 Identities = 178/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919 ||||||| || || || || || || || || || || ||||| |||||||||||||||| Sbjct 47209 GTATGCAGATTTTCGTCAAGACTCTGACCGGCAAGACCATCACTCTCGAGGTTGAGTCGT 47150 Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATC 171979 | ||||| ||||| ||| |||| |||||||| || || ||||| || || || || || | Sbjct 47149 CGGACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCGGACC 47090 Query 171980 AGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACA 172039 ||||||| || ||||| || || || ||||| || ||||| || |||||| | || |||| Sbjct 47089 AGCAACGCCTGATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACA 47030 Query 172040 ACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 || | || |||||||| || || ||||| ||||| | || || ||||| Sbjct 47029 ACATCCAGAAGGAGTCGACCCTCCACCTCGTTCTTCGTCTCCGCGGTGG 46981 Score = 159 bits (176), Expect = 5e-34 Identities = 157/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 171886 ACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCC 171945 || ||||| || || ||||||||||| |||||||| ||||| ||||| ||| |||| || Sbjct 46391 ACGGGAAAGACCATTACCCTCGAGGTCGAGTCGTCTGACACCATCGACAACGTCAAGGCG 46332 Query 171946 AAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAA 172005 ||||| || || ||||| || || || || || ||||| || || || || || || || Sbjct 46331 AAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAGCGTCTCATCTTCGCCGGCAAG 46272 Query 172006 CAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACAC 172065 ||||| ||||| || |||||||| | || |||||| | || |||||||| || || ||| Sbjct 46271 CAGCTCGAAGACGGTCGTACCCTTTCGGACTACAACATCCAGAAGGAGTCGACGCTTCAC 46212 Query 172066 CTTGTTCTAAGGCTTCGGGGTGG 172088 |||||||| | || || ||||| Sbjct 46211 CTTGTTCTCCGACTGCGTGGTGG 46189 Score = 123 bits (136), Expect = 3e-23 Identities = 122/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 171882 CCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAA 171941 ||| || ||||| || ||||||||||| || ||||| || ||||| ||||| ||| |||| Sbjct 47474 CCTCACCGGAAAGACCATCACCCTCGAAGTCGAGTCTTCGGACACCATCGACAACGTCAA 47415 Query 171942 AGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGG 172001 |||||||| || || ||||| ||||| || || || ||||| || || || || || || Sbjct 47414 GGCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAGCAGCGTCTGATCTTCGCCGG 47355 Query 172002 TAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACA 172039 || ||||| || || || || ||||| |||| |||| Sbjct 47354 CAAGCAGCTCGAGGACGGCCGCACCCTTTCTGACTACA 47317 Score = 120 bits (132), Expect = 4e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 171886 ACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCC 171945 || || || || |||||||||||||| ||||| || ||||| || || || |||| || Sbjct 46109 ACCGGCAAGACGATCACCCTCGAGGTCGAGTCTTCTGACACCATTGACAATGTCAAGGCG 46050 Query 171946 AAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAA 172005 ||||| || || ||||| || || || || || || || || || || || || || || Sbjct 46049 AAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAACAGCGTCTGATCTTCGCGGGCAAG 45990 Query 172006 CAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACAC 172065 ||||| || || ||| | ||||| || |||||| | || |||||||| || || ||| Sbjct 45989 CAGCTCGAGGACGGAAGGACCCTGAGCGACTACAACATCCAGAAGGAGTCGACGCTGCAC 45930 Query 172066 CTTGTTCTAAGGCTTCGGGGTGGT 172089 || || || | || || |||||| Sbjct 45929 CTCGTCCTCCGTCTGCGTGGTGGT 45906 Score = 84.2 bits (92), Expect = 3e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || ||||||| ||||| || || || || || || || || ||||||||||||||||| | Sbjct 46756 GTGGTATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACGATCACCCTCGAGGTTGAAT 46697 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAG 171960 |||| ||||| || || ||| | || || ||||| || || ||| Sbjct 46696 CGTCCGACACGATTGACAACGTGAAGGCGAAGATCCAGGACAAG 46653 >seq5 Length=1498571 Score = 149 bits (164), Expect = 8e-31 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 171882 CCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAA 171941 |||||| || || || |||||||||||||| ||||| || ||||| ||||| || |||| Sbjct 692243 CCTTACGGGCAAGACGATCACCCTCGAGGTGGAGTCTTCCGACACCATCGACAATGTCAA 692184 Query 171942 AGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGG 172001 |||||||| || || ||||| || || || || || || || || || || || || || Sbjct 692183 GGCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAACAGCGCCTGATCTTCGCGGG 692124 Query 172002 TAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCT 172061 || ||||| || || || || |||||| | || |||||| | || |||||||| || || Sbjct 692123 CAAGCAGCTCGAGGACGGCCGAACCCTCTCGGACTACAACATCCAGAAGGAGTCGACCCT 692064 Query 172062 ACACCTTGTTCTAAGGCTTCGGGGTGGTGC 172091 ||||| || || | || || |||||||| Sbjct 692063 CCACCTCGTGCTCCGTCTGCGTGGTGGTGC 692034 >seq3 Length=1717572 Score = 113 bits (124), Expect = 6e-20 Identities = 119/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 171883 CTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAA 171942 || || || || || |||||||||||||| ||||| || ||||| ||||| ||| |||| Sbjct 192776 CTCACCGGGAAGACCATCACCCTCGAGGTGGAGTCCTCGGACACCATCGACAACGTCAAG 192717 Query 171943 GCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGT 172002 || ||||| || || ||||| || || || || || || || || || ||||| || || Sbjct 192716 GCGAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAACAGCGTCTCATTTTCGCCGGC 192657 Query 172003 AAACAGCTTGAAGATGGACGTACCCTCGCTGATTACA 172039 || ||||| || || || |||||||| | || |||| Sbjct 192656 AAGCAGCTCGAGGACGGCCGTACCCTTTCGGACTACA 192620 Score = 105 bits (116), Expect = 9e-18 Identities = 188/271 (69%), Gaps = 10/271 (4%) Strand=Plus/Minus Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCG 195781 || || || ||||||| || || || || | || || |||||||| | | | ||||| Sbjct 59558 GTCCCCGCCTACTTCAACGACTCGCAGCGTCTCGCCACCAAGGACGCCGGTACCATTGCC 59499 Query 195782 GGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTG 195841 ||||| | || | || ||||| || || || || || || || || || ||||| Sbjct 59498 GGTCTCGAGGTCCTCCGTATCATCAACGAGCCCACCGCCGCCGCCATCGCCTACGGTCTT 59439 Query 195842 GACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTT 195901 ||| |||| | | || || || || | |||||||| |||||||||||||| || Sbjct 59438 GACGAGAAGACCAAGGAGGAGCGCAACGTCCTCATCTTTGACCTCGGTGGTGGTACCTTC 59379 Query 195902 GATGTCTCACT--TCTCAAT-ATTG--AAGGTGGTATATTCGAAGTAAAGGCTACTGCTG 195956 |||||||| || |||| || | | |||||| |||| || ||||| || || | Sbjct 59378 GATGTCTCCCTGCTCTCCATCACCGGCAAGGTG-----TTCGCCGTCAAGGCCACCGCCG 59324 Query 195957 GTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 |||| || || || |||||||| || ||||| Sbjct 59323 GTGACACCCACCTCGGTGGTGAGGACTTCGA 59293 >seq14 Length=977059 Score = 87.8 bits (96), Expect = 2e-12 Identities = 219/328 (67%), Gaps = 11/328 (3%) Strand=Plus/Plus Query 78049 TCACGCAACACCTACTTTGTTTAATGCAGGTACTCCCCGTCCACAGATGTCATCTTGTTT 78108 |||||| | || || | || || || || || ||| || |||||||| || || || Sbjct 767927 TCACGCCTCGCCCACGCTCTTCAACGCCGGCACGCCCAACCCCCAGATGTCGTCGTGCTT 767986 Query 78109 CCTACTTGCAAATAAGGAGGACTCTATTAATGGTATATACGGGACTCTCACAGA-GTGTG 78167 ||| | || | | ||| ||||| ||| | || || |||| ||| |||| ||| ||| | Sbjct 767987 CCTCGTCGCCATGAGGGACGACTCGATTGACGGGATCTACGAGACGCTCA-AGACGTGCG 768045 Query 78168 CTCAGATTTCTAAGTGGGCTGGTGGTATAGGTCTTCATATTCACGATGTTCGTGCAAACA 78227 ||||||| || ||| || |||||||| |||||||| || ||| | | || || || Sbjct 768046 CTCAGATCTCAAAGACCGCCGGTGGTATCGGTCTTCACATCCACAACATCCGCGCCAAGG 768105 Query 78228 AGTCCAGGATTAGAGGAACTAATGGTCAGTCTGATGGAATTATTCCTATGCTTAGGGTAT 78287 ||| || || || || ||| | || | || || | || ||||| | | | Sbjct 768106 GCTCCTACATCGCCGGTACCAACGGTTACTCGAACGGTATCGTCCCGATGCTCCGCGCGT 768165 Query 78288 TCAATGCTACAGCACGCTATGTCAACCAAGCGGGTCGTAGGAAGGG-----GT-CATTCG 78341 | | || || || ||||| ||| |||| |||| | | ||| | || | || | Sbjct 768166 ACGACGCCACTGCCCGCTACGTCGACCA---GGGTGGCAACAAGCGTCCCGGTGCCTTTG 768222 Query 78342 CTATGTACCTTGAACCTTGGCACGCCGA 78369 | || ||||| || |||||||||||||| Sbjct 768223 CGATCTACCTCGAGCCTTGGCACGCCGA 768250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657861947719600