Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20sp._20JCM_2024511_20[genbank_20GCA_5F001600855.1_2020 16-03-01] 55 sequences; 28,180,937 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq14 219 5e-51 seq18 181 1e-39 seq1 118 1e-20 seq11 91.5 2e-12 >seq14 Length=977059 Score = 219 bits (242), Expect = 5e-51 Identities = 341/489 (70%), Gaps = 15/489 (3%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||||||||||||||| || ||| ||| | |||||||||| || |||| ||||| || Sbjct 768194 CTGGTCGACGTAGCGGGCAGTGGCGTCGTACGCGCGGAGCATCGGGACGATACCGTTCGA 768135 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 | |||||||| || || | ||||| ||| |||||| | ||||| | || || Sbjct 768134 GTAACCGTTGGTACCGGCGATGTAGGAGCCCTTGGCGCGGATGTTGTGGATGTGAAGACC 768075 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 ||| || ||||| | ||| ||||| | |||||| |||||||| |||||||| || || Sbjct 768074 GATACCACCGGCGGTCTTTGAGATCTGAGCGCACGTCTTGAGCGTCTCGTAGATCCCGTC 768015 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 ||||||||| || ||||| | ||||| ||||||||||| | || |||| | |||||| Sbjct 768014 AATCGAGTCGTCCCTCATGGCGACGAGGAAGCACGACGACATCTGGGGGTTGGGCGTGCC 767955 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 |||||||||||||||||||| || ||||| | || ||||||| || ||| || Sbjct 767954 GGCGTTGAAGAGCGTGGGCGAGGCGTGAGTGAAGTATCGCTCCGACATGAGGTTGTACGT 767895 Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424 ||| | | | ||| | || || | || | | |||| |||||| Sbjct 767894 CTCGATGA------------CCTTGTCGATGTTGG---ATCCGTGGATACCGACGGCGAC 767850 Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGA 1630484 ||||||| ||||| |||||| |||||||| | |||| | | ||||| || Sbjct 767849 ACGCATGATCATGTGCTGGGGTCGCTCGACAATCTTGCCGTTGATGCGGAGGAGGTACGA 767790 Query 1630485 CCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGTGGCGGATGGC 1630544 ||| | ||| ||| |||||||||| | ||||| |||||||||| | |||||| Sbjct 767789 CCGCTCGAGCGTCTTGAAGCCAAAGTAGTTGTACGCAAAGTCGCGGTCGTAGATGATGGC 767730 Query 1630545 GGCGTCGAG 1630553 |||||| Sbjct 767729 ACTGTCGAG 767721 Score = 196 bits (216), Expect = 6e-44 Identities = 345/506 (68%), Gaps = 8/506 (2%) Strand=Plus/Minus Query 1628099 CGACAAACTTGGGCAGGGCCACGCTGGAAAGGTTGCAAGTCGCCACTTCCGTGGGCGACG 1628158 |||||||| ||| ||||| | || |||||||| || || || ||| | | Sbjct 768696 CGACAAACGCGGGGAGGGCGAGCGAGGCGAGGTTGCAGACGGCGACCTCGTCGGGGGCAG 768637 Query 1628159 AAAACTGGACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGT 1628218 | ||| || |||||||||||| ||||||| |||| | | || || |||| |||||||| Sbjct 768636 AGTACTCGATGATCTCGGTGCAGAGGTTGGACGACTTGATGGTGCCGAGGTGCTGCTGGT 768577 Query 1628219 TGGTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCG 1628278 ||| | |||| |||||||||||| ||||||| |||| | ||||||||| |||| | Sbjct 768576 TGGACTTTGCGTTGGCGGCGTCCTTGTAGAGCATGAAGGGGCCACCGGTCTCGGTCTGGG 768517 Query 1628279 CCGCGACGATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCC-GCGCGCG--GCCCT 1628335 || ||| |||||| |||||| || |||| | || ||| ||| | ||| Sbjct 768516 CCTCGAGGATGGCAAACCAGAGCTTCTGCGC---CTTGATCGTCTTGCGACCCTTGCCGG 768460 Query 1628336 NNNNNNNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCAC-TCGTGCAGGCCG 1628394 ||||| |||||| |||| ||| |||||| Sbjct 768459 CCTGCTCGTAGCTCTCGTAGAGCTTCTCAAACTGGTCGCCGT-GCACGTCGGCGAGGCCG 768401 Query 1628395 GGCGCCTCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCATAAAG 1628454 || ||||| || || | ||||| ||||||||| ||| | | |||| ||| ||| Sbjct 768400 GGGCACTCGGCGGGGCACATGAGCGTCCAGTCGCCGTCGGCCTCGACGCGCTTCATGAAG 768341 Query 1628455 AGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGG 1628514 ||||| | |||| || ||||| || ||||| || || ||| ||||||||||||||| Sbjct 768340 AGGTCCGAGATCCAGAGGGCGTAGAACAGGTCACGGGCGCGGACTTCCTCCTTGCCGTGG 768281 Query 1628515 TTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCA 1628574 ||||| |||||||||| |||||| |||||||||||||| ||||| |||||| ||| Sbjct 768280 TTCTTCCTGAGGTCGAGGAAGTCGAAGATGTCGGCGTGCCAAGGCTCGAGGTAGATCGCA 768221 Query 1628575 AAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 ||||| || |||||| ||| || Sbjct 768220 AAGGCACCGGGACGCTTGTTGCCACC 768195 Score = 89.7 bits (98), Expect = 6e-12 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 509108 ATCGGCGGGCGCGAGGGCCTCGTCGACACGGCCGTCAAGACGGCCGAGACGGGCTACATC 509167 || || || || ||||| || |||||||||| ||||||||||| |||||||| ||||| Sbjct 695312 ATGGGTGGTCGTGAGGGTCTTATCGACACGGCGGTCAAGACGGCTGAGACGGGATACATT 695371 Query 509168 CAGCGCCGGTGCATCAAGTCGATGGAGAGCCTGCAGATCAAGCGCGGCGGCCTCGTGCGC 509227 ||||| | ||||| |||||||| |||| || | | || |||| ||||| Sbjct 695372 CAGCGGAGACTGGTCAAGGCGATGGAGGACCTGAAGGTGGGGTACGACGGCACGGTGCGG 695431 Query 509228 AACGCCAACGGCGACATCGTCCAGTTTGCCTATGGCGGCGACGG 509271 ||| | ||||| || |||| ||||| ||| || | ||||| Sbjct 695432 AACTCGAACGGAGAGGTCGTTCAGTTCCTCTACGGAGAAGACGG 695475 Score = 89.7 bits (98), Expect = 6e-12 Identities = 128/178 (72%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 1627348 AAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGACCTCGCACGCCTCG 1627407 ||||| || |||||||| ||||| | ||| | | |||| | |||| | |||| Sbjct 769234 AAGTCACCAGAGAGCACACGGCGGGCGTACAGCATCGAGGTGTAGGGCTCGAAGCACTCG 769175 Query 1627408 GTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGGAGCGAGTTG 1627467 | || ||||||||||| |||| ||| |||||||| |||| ||||||||||||||| Sbjct 769174 TTCCACCCGAGGATCTGCGAGGTCGAGGCGGTGGGCATCGGCGCGACGAGGAGCGAGTTG 769115 Query 1627468 CGCAGGCCGTGCTG-TCGAACTAGCGCGCGCAGCGCGTCCCAGTCCCAGCGGCCGCTC 1627524 || | |||||||| | || | | |||| || | ||||||||||| || || || Sbjct 769114 CGGACACCGTGCTGCTTGATGT-TCTCGCGGAGAGGAGCCCAGTCCCAGAGGTCGGTC 769058 Score = 86.0 bits (94), Expect = 8e-11 Identities = 108/147 (73%), Gaps = 6/147 (4%) Strand=Plus/Minus Query 1626984 GTCGACGGTAAACTGGATGGCGTCGGCGGCGGGCCTGGTGCGCAGATAGTACATGCCGGT 1627043 ||| | ||| ||||||||||| | ||||| ||| ||||||| || ||||| || || Sbjct 769658 GTCAATGGTGAACTGGATGGCCTGGGCGGAAGGCTTGGTGCGGAGGTAGTAGCACCCAGT 769599 Query 1627044 CTTGAGGCCGCGGCGCCACGCGTAGGCGTGCATCGACGTGATGCGCTCGGG---CGTCGC 1627100 |||||| ||||| ||| ||||| |||||||||||||| ||| ||| || || Sbjct 769598 CTTGAGTCCGCGCTTCCAGCCGTAGAAGTGCATCGACGTGA---GCTGGGGGAACGACGG 769542 Query 1627101 GTCGGCGCAGTACAGGTTGAGCGACTG 1627127 || |||| || | ||||||||| || Sbjct 769541 GTTGGCGAGGTGGATGTTGAGCGATTG 769515 >seq18 Length=823183 Score = 181 bits (200), Expect = 1e-39 Identities = 216/288 (75%), Gaps = 9/288 (3%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| ||||| || ||| | |||||| |||| |||||||||||||||||||||||| Sbjct 29477 ACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGGCCGCGCTT 29536 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||||||||| ||||| | | ||| ||| ||||| ||||||||||||||||||||||| Sbjct 29537 CTTGAGCCAGAAGATCGAGGCGAACGAGCCGGAGAAGAAGATGCCCTCGACGGCGGCAAA 29596 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 | ||||||| |||||||| || ||| || || | | | |||||||||| | ||||| Sbjct 29597 GGCGATGAGACGCTCGGCGAACGTG--GA-GCGCGTGTCGGTGATCCACTTGAGAGCCCA 29653 Query 869359 GTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGT--GGTCCTTT 869416 ||||||| ||| | |||| | ||||||||||| || |||| | || Sbjct 29654 TGCGGCCTTCTTCTGGATGCACGGGATGGTGTCGATGGCCTCGAACAGGTACGATC---G 29710 Query 869417 TCGGCCGG-GTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 ||| ||| |||||||| || |||||||| ||||| || || ||||| Sbjct 29711 GCGGGCGGCGTCCTTGATGTACGTGTCGATGAGGAGGGAGTAAGTCTC 29758 Score = 138 bits (152), Expect = 1e-26 Identities = 130/166 (78%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 868709 ACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAAC 868768 || ||| |||||| ||||| | |||||||| ||||||||||| |||||| | ||| Sbjct 29055 ACTCGCGACTCGAAGAAGTTCGCCTTGCCCTGGAGCGAGATCATCTCCATGAAGTCGAAG 29114 Query 868769 GGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGGTCGGCGACA 868828 ||||||| | || || ||| ||| ||||| | ||||||| |||||||||||| Sbjct 29115 GGGTTGGTGGCGTTCCAGATCTTGTCGTTGCCGAGGGCGACGAGCAGACGGTCGGCGACA 29174 Query 868829 AACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCG 868874 ||||||||||| ||||||||||| || ||||||||||||||||| Sbjct 29175 AACTCGATGTATTGGCACATGAGCTTGGAGTTCATGCCGATGAGCG 29220 >seq1 Length=2178591 Score = 118 bits (130), Expect = 1e-20 Identities = 179/255 (70%), Gaps = 0/255 (0%) Strand=Plus/Minus Query 18228 GCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTCACGCTCGG 18287 |||| |||| ||| | ||| | ||||| || || ||| ||||| | || ||||| Sbjct 1539355 GCGCTCCGAGTTCGACCAGGTCCACCTCCAGAGCGGTACCGAGCACGGCGTGACTCTCGG 1539296 Query 18288 CTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACTATTCCGACAT 18347 | ||| ||||||| | ||| ||| |||||||| || ||| || |||| | Sbjct 1539295 TACACCCATCGGCCTTCTCGTGCAGAACAAGGACCAGCGCCCTCACGATTACGCCGAGAC 1539236 Query 18348 GTGCAAGGTGCCGCGGCCCTCACACGCCGACTACACCTACATGGCCAAGTACGGCATCAA 18407 | | || || || || || || ||||||||||| | || ||||||||| |||| Sbjct 1539235 GGACCTCTACCCCCGACCGTCCCATGCGGACTACACCTATCTCGCGAAGTACGGCGTCAA 1539176 Query 18408 GGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGG 18467 ||||||||| ||||| |||||| | || || || |||||| || || |||||||| || Sbjct 1539175 GGCGTCGTCCGGCGGCGGCCGGGCATCGGCGCGAGAGACCATCGGCCGTGTCGCCGCAGG 1539116 Query 18468 CGCGGTCGCCGAGAA 18482 ||| |||| ||||| Sbjct 1539115 AGCGATCGCGGAGAA 1539101 Score = 107 bits (118), Expect = 2e-17 Identities = 134/180 (74%), Gaps = 3/180 (2%) Strand=Plus/Minus Query 19015 TCTAGGCCATTGAAGACGCCAAGCGCCAAGAGGACAGCATCGGCGGCACGGTGACGTGCG 19074 || ||| |||| | ||||||| || || ||| |||||||||| || || |||| Sbjct 1538632 TCCAGGTCATTCGCGCCGCCAAGGCCCGCGACGACTCTCTCGGCGGCACCGTCACCTGCG 1538573 Query 19075 TGTGTCGCAACGTGCCGGCA-GGCCTCGGCGAGCCGTGCTTTGACAAGATCGAGGCCGCG 19133 || || || |||| | || ||||||||||| |||||||||| ||||||| | | Sbjct 1538572 TGATCCGTCAC-TGCCCTCTCGGACTCGGCGAGCCTGCCTTTGACAAGCTCGAGGCTGTG 1538514 Query 19134 CTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGGATTCGAGATTGGCAGCGGGTTT 19193 ||||| ||||| ||||| || ||||| | |||||||| |||||||| ||| ||||||| Sbjct 1538513 CTCGCGCACGCGATGCTCTCCATCCCTTCTACCAAGGGCTTCGAGATCGGC-TCGGGTTT 1538455 >seq11 Length=1203489 Score = 91.5 bits (100), Expect = 2e-12 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 1592225 GGGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACC 1592284 ||||||||| | || || |||||||||||||||||| |||||||||||||||||||| | Sbjct 207228 GGGTGCAAGACCGTTGCGAACATGATCAAGGGCAAGACGCCCGAGGAGATCCGCAAGCTC 207287 Query 1592285 TTTAACATCA 1592294 || ||||||| Sbjct 207288 TTCAACATCA 207297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107134686442435