Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20sp._20JCM_2024511_20[genbank_20GCA_5F001600855.1_2020 16-03-01] 55 sequences; 28,180,937 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq14 190 3e-42 seq18 181 2e-39 seq7 118 2e-20 seq11 86.0 1e-10 >seq14 Length=977059 Score = 190 bits (210), Expect = 3e-42 Identities = 342/500 (68%), Gaps = 15/500 (3%) Strand=Plus/Minus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||||||||| ||||| || ||| ||| | |||||||||| || || | ||||| || Sbjct 768194 CTGGTCGACGTAGCGGGCAGTGGCGTCGTACGCGCGGAGCATCGGGACGATACCGTTCGA 768135 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 | |||||||| || || | ||||| |||| |||||| | ||||| | || || Sbjct 768134 GTAACCGTTGGTACCGGCGATGTAGGAGCCCTTGGCGCGGATGTTGTGGATGTGAAGACC 768075 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||| || ||||| | ||| ||||| | |||||| | || |||||||||||||| || || Sbjct 768074 GATACCACCGGCGGTCTTTGAGATCTGAGCGCACGTCTTGAGCGTCTCGTAGATCCCGTC 768015 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 ||||||||| || ||||| | | || ||||||||||| | || ||| | |||||| Sbjct 768014 AATCGAGTCGTCCCTCATGGCGACGAGGAAGCACGACGACATCTGGGGGTTGGGCGTGCC 767955 Query 2073780 GGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAGGT 2073839 ||| |||||||||||||||| || ||| | | | | |||||| | ||| || Sbjct 767954 GGCGTTGAAGAGCGTGGGCGAGGCGTGAGTGAAGTATCGCTCCGACATGAGGTTGTACGT 767895 Query 2073840 GGCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGCGAC 2073899 ||| || | ||| || || || | || | | |||| |||||| Sbjct 767894 CTCGATGAC---------CTTGTC---GATGTTGG---ATCCGTGGATACCGACGGCGAC 767850 Query 2073900 GCGCATGATCATGTACTGGGGTCGCTCGACGACGGCGTCGCGCACCTTGGTCAGGTAGGA 2073959 ||||||||||||| ||||||||||||||| | | || | | ||||| || Sbjct 767849 ACGCATGATCATGTGCTGGGGTCGCTCGACAATCTTGCCGTTGATGCGGAGGAGGTACGA 767790 Query 2073960 CCGACGCAGGGTCGCCAGGCCAAAGTACGAGTAGGCCAGGTCGCGCTCGTGGCGGATGGC 2074019 ||| || ||| | ||||||||| ||| || | |||||| |||| | |||||| Sbjct 767789 CCGCTCGAGCGTCTTGAAGCCAAAGTAGTTGTACGCAAAGTCGCGGTCGTAGATGATGGC 767730 Query 2074020 GGCGTCGAGGGCCTCCTTGT 2074039 |||||| | ||||||| Sbjct 767729 ACTGTCGAGAACGTCCTTGT 767710 Score = 185 bits (204), Expect = 1e-40 Identities = 306/446 (69%), Gaps = 14/446 (3%) Strand=Plus/Minus Query 2071574 ACTGGACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGC 2071633 ||| || || ||||||||| ||||||| |||| | ||||||| |||| |||||||||| Sbjct 768633 ACTCGATGATCTCGGTGCAGAGGTTGGACGACTTGATGGTGCCGAGGTGCTGCTGGTTGG 768574 Query 2071634 TGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCG 2071693 | |||| |||||||||||| |||||| |||| |||| |||||| |||| ||| Sbjct 768573 ACTTTGCGTTGGCGGCGTCCTTGTAGAGCATGAAGGGGCCACCGGTCTCGGTCTGGGCCT 768514 Query 2071694 TGACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAGGTCCTCGCGCGGCCCTNNNNNN 2071753 || |||||| |||| | | |||| | | || || ||| |||| Sbjct 768513 CGAGGATGGCAAACCAGAGCTTCTGCGC------CTTGATCGTCTTGCGACCCTTGCCGG 768460 Query 2071754 NNNNNNNNNNNN------AGAGGGCGTCAAAGGCGGCGCCGTGGCAC-TCGTGCAGGCCG 2071806 |||| ||||| | ||||||| ||| ||| |||||| Sbjct 768459 CCTGCTCGTAGCTCTCGTAGAGCTTCTCAAACTGGTCGCCGTG-CACGTCGGCGAGGCCG 768401 Query 2071807 GGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAAC 2071866 || ||||| ||||| | ||||| |||||||||| | | | | ||||| ||| || Sbjct 768400 GGGCACTCGGCGGGGCACATGAGCGTCCAGTCGCCGTCGGCCTCGACGCGCTTCATGAAG 768341 Query 2071867 AGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGG 2071926 ||||| | |||| ||| |||| || || || || || ||| ||||||||||||||| Sbjct 768340 AGGTCCGAGATCCAGAGGGCGTAGAACAGGTCACGGGCGCGGACTTCCTCCTTGCCGTGG 768281 Query 2071927 TTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCA 2071986 ||||| | |||||||| |||||| || |||||||||||| ||||| |||||| ||| Sbjct 768280 TTCTTCCTGAGGTCGAGGAAGTCGAAGATGTCGGCGTGCCAAGGCTCGAGGTAGATCGCA 768221 Query 2071987 AAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 ||||| || |||||| ||| || Sbjct 768220 AAGGCACCGGGACGCTTGTTGCCACC 768195 >seq18 Length=823183 Score = 181 bits (200), Expect = 2e-39 Identities = 224/302 (74%), Gaps = 7/302 (2%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| ||||| || ||| | |||||| ||| |||||||||||||||||||||||| Sbjct 29477 ACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGGCCGCGCTT 29536 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||||||||| ||||| | ||| ||| ||||| ||||||||||||||||||||||| Sbjct 29537 CTTGAGCCAGAAGATCGAGGCGAACGAGCCGGAGAAGAAGATGCCCTCGACGGCGGCAAA 29596 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 | ||| ||| |||||||| || ||| || | | | |||||||||| | ||||| Sbjct 29597 GGCGATGAGACGCTCGGCGAACGTG---GAGCGCGTGTCGGTGATCCACTTGAGAGCCCA 29653 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTC-T 794578 | ||||| ||| | | || | ||||||||||| || |||| | || Sbjct 29654 TGCGGCCTTCTTCTGGATGCACGGGATGGTGTCGATGGCCTCGAACAGGT--ACGATCGG 29711 Query 794579 CGACCGG-GTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTT 794637 || ||| |||||||| ||| |||||||||||||| ||||| ||||| ||||||||||| Sbjct 29712 CGGGCGGCGTCCTTGATGTACGTGTCGATGAGGAGGGAGTAAGTCTCGGAGTGGATGTTC 29771 Query 794638 TC 794639 || Sbjct 29772 TC 29773 Score = 120 bits (132), Expect = 5e-21 Identities = 154/208 (74%), Gaps = 12/208 (6%) Strand=Plus/Plus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| |||| ||| || || | || ||| |||||| ||||| | |||||||| || Sbjct 29029 TGACACCCGACTTTGCGTATGCCGAGACTCGCGACTCGAAGAAGTTCGCCTTGCCCTGGA 29088 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGC--CGT--CAGGTAGTGCTTCTCGCAC 794006 ||||||||| |||||| | ||| ||||||| ||| ||| | ||| ||| Sbjct 29089 GCGAGATCATCTCCATGAAGTCGAAGGGGTTGGTGGCGTTCCAGAT----CTTGTCGTTG 29144 Query 794007 CCGAG--CGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGG 794064 ||||| ||||| ||||| ||||||||||| || || ||||| ||||||||||| || Sbjct 29145 CCGAGGGCGACG--AGCAGACGGTCGGCGACAAACTCGATGTATTGGCACATGAGCTTGG 29202 Query 794065 CGTTCATGCCGATGAGCGCCACGGGCAG 794092 ||||||||||||||||| ||||| || Sbjct 29203 AGTTCATGCCGATGAGCGAGACGGGGAG 29230 >seq7 Length=1401232 Score = 118 bits (130), Expect = 2e-20 Identities = 147/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||||||||||||||| ||||| |||| ||||||| ||| || || ||| | | Sbjct 1063330 GTACTTGGTGACGGCCTTGGTGCCCTCGGAGATGGCGTGCTTGGAAAGCTCTCCGGGGAG 1063389 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG 1485590 ||| ||||| |||| ||||||||||||||||| ||| || || | ||| || || Sbjct 1063390 GATGAGGCGGACGGAGGTCTGGATCTCGCGGGAAGAGATGGTCGAACGGTGGTT-GTACG 1063448 Query 1485591 -CGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 || || | |||||||| ||||||| |||| ||||| ||| |||||||| | Sbjct 1063449 AGGCGAGCTTGGAGGCCTCGGAAGCGATGCGCTCGAAGATGTCCGAGACGAACGAGTTGA 1063508 Query 1485650 TGATCGACATCGATTTGTT 1485668 ||| | ||| | ||||| Sbjct 1063509 GGATGGCCATGGCCTTGTT 1063527 >seq11 Length=1203489 Score = 86.0 bits (94), Expect = 1e-10 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 2035686 GGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACC 2035745 |||||||||||||| || ||| | |||||||||||| |||||||||| ||||||||| | Sbjct 207228 GGGTGCAAGACCGTTGCGAACATGATCAAGGGCAAGACGCCCGAGGAGATCCGCAAGCTC 207287 Query 2035746 TTTAACATCA 2035755 || ||||||| Sbjct 207288 TTCAACATCA 207297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916240549399145