Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20sp._20JCM_2024511_20[genbank_20GCA_5F001600855.1_2020 16-03-01] 55 sequences; 28,180,937 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq18 125 5e-24 seq5 84.2 1e-11 >seq18 Length=823183 Score = 125 bits (138), Expect = 5e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | |||| ||| || || ||||| ||||| || ||| | || | || Sbjct 46768 AGGACGAGGTGGAGGGTGGACTCTTTTTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCT 46827 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| |||||||| || || ||||| |||||| |||| | ||||||||||| Sbjct 46828 TCCAGCTGCTTGCCGGCGAAAATGAGACGTTGTTGGTCTGGCGGGATGCCCTCCTTGTCC 46887 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || ||||| | |||| || | |||||| || | || || ||| Sbjct 46888 TGGATCTTCGCCTTGACATTGTCGATCGTGTCGGACGACTCGACCTCGAGCGTGATCGTC 46947 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || |||||||||||||| || ||||||||||| Sbjct 46948 TTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 46979 Score = 116 bits (128), Expect = 2e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||| | ||| ||||||||| ||||| ||||| || ||| |||| |||| Sbjct 46996 AGAACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCC 47055 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| |||||||| ||||| ||||||||||| | || | ||||||||||| Sbjct 47056 TCGAGCTGCTTGCCGGCGAAAATCAGGCGTTGCTGGTCCGGAGGGATACCCTCCTTGTCC 47115 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | |||| || | ||| || || | || |||||| Sbjct 47116 TGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGACGACTCAACCTCGAGAGTGATGGTC 47175 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || || ||||| || || |||||||| Sbjct 47176 TTGCCGGTCAGAGTCTTGACGAAAATCTGCAT 47207 Score = 105 bits (116), Expect = 4e-18 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||||| || ||||||||| ||||| |||||||| ||| | || | || Sbjct 46204 AGAACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGACCGTCT 46263 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||||||||| || || |||||||| | || | ||||||||||| Sbjct 46264 TCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCC 46323 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | ||| | |||||| || | ||| |||||| Sbjct 46324 TGGATCTTCGCCTTGACGTTGTCGATGGTGTCAGACGACTCGACCTCGAGGGTAATGGTC 46383 Query 34946 TTTCCCGT 34953 |||||||| Sbjct 46384 TTTCCCGT 46391 Score = 84.2 bits (92), Expect = 1e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 34802 TAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGG 34861 ||||| || ||| |||| | || || || ||||| |||||||||||||| || |||||| Sbjct 47319 TAGTCAGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGG 47378 Query 34862 TCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTG 34921 || | || | ||||||||||| | || || |||||| | || | || Sbjct 47379 TCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAA 47438 Query 34922 GCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGG 34957 | |||||| || | ||| ||||||||||| |||||| Sbjct 47439 GACTCGACTTCGAGGGTGATGGTCTTTCCGGTGAGG 47474 >seq5 Length=1498571 Score = 84.2 bits (92), Expect = 1e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||| | ||| ||||||||| ||||| |||||||| ||| | || | || Sbjct 692052 AGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTTCGGCCGTCC 692111 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| || ||||||||||| || || ||||| | || | ||||||||||| Sbjct 692112 TCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGTTGGTCCGGGGGGATACCCTCCTTGTC 692170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325692581684045