Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20sp._20JCM_2024511_20[genbank_20GCA_5F001600855.1_2020 16-03-01] 55 sequences; 28,180,937 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq18 111 3e-19 seq5 89.7 1e-12 >seq18 Length=823183 Score = 111 bits (122), Expect = 3e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| || || || ||||| || || || || || || || ||| ||| Sbjct 46765 CGGAGGACGAGGTGGAGGGTGGACTCTTTTTGGATGTTGTAGTCGGAGAGGGTTCGGCCG 46824 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| || || || || || || || || | |||||| ||||| || || || ||||| Sbjct 46825 TCTTCCAGCTGCTTGCCGGCGAAAATGAGACGTTGTTGGTCTGGCGGGATGCCCTCCTTG 46884 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| || || ||||| || ||||| || | || || || | || ||| Sbjct 46885 TCCTGGATCTTCGCCTTGACATTGTCGATCGTGTCGGACGACTCGACCTCGAGCGTGATC 46944 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||||||| || | ||||| || || ||||||||| Sbjct 46945 GTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATT 46980 Score = 98.7 bits (108), Expect = 2e-15 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| || | || ||| || || | |||||| || || || ||||| || || || || Sbjct 45906 ACCACCACGCAGACGGAGGACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 45965 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | || ||||| || || || || || || ||||| || | ||||| || || || Sbjct 45966 CAGGGTCCTTCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGACGCTGTTGGTCCGGGGG 46025 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || || ||||| || || ||||| || || ||||| ||||| || ||| || || || Sbjct 46026 GATACCCTCCTTGTCCTGGATCTTCGCCTTGACATTGTCAATGGTGTCAGAAGACTCGAC 46085 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAA 82789 || | || ||||||||||| ||||| Sbjct 46086 CTCGAGGGTGATCGTCTTGCCGGTCAA 46112 >seq5 Length=1498571 Score = 89.7 bits (98), Expect = 1e-12 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| || | || ||| || || | ||| || || || || ||||| || || || || || Sbjct 692036 ACCACCACGCAGACGGAGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 692095 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || ||| ||||| || || || || || || ||||| || | ||||| || || || Sbjct 692096 GAGGGTTCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGTTGGTCCGGGGG 692155 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || || ||||| || || ||||| || || ||||| || || || || || || || Sbjct 692156 GATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCCAC 692215 Query 82763 TTCCAAAGTTATCGTCTTGCCTGT 82786 || | || ||||||||||| || Sbjct 692216 CTCGAGGGTGATCGTCTTGCCCGT 692239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981826508118645