Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20sp._20JCM_2024511_20[genbank_20GCA_5F001600855.1_2020 16-03-01] 55 sequences; 28,180,937 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq14 282 4e-71 seq18 145 7e-30 seq3 111 2e-19 seq5 102 8e-17 seq13 86.0 6e-12 >seq14 Length=977059 Score = 282 bits (312), Expect = 4e-71 Identities = 1137/1759 (65%), Gaps = 59/1759 (3%) Strand=Plus/Minus Query 148051 ACGACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTA 148110 |||||| |||||||| || || || |||||||| ||||| | ||||||| |||| Sbjct 769455 ACGACTCACTCTGGTCGATAAAGGCACCACGGTCCGCGGCGAGGTCAATGACCGCCTTTT 769396 Query 148111 TCTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGC 148170 ||||||||| |||||||||| | | ||||| | |||| |||| ||| | Sbjct 769395 GGGAAATCTCCCAGACCGTCTTGTAGATCGCCTTGAGCTCTGCGGGGATGC--TCGGAAC 769338 Query 148171 G--CTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTT---CGTCCGTGTATAG 148225 | ||| | |||||||| || | || | || ||| | ||||| | || Sbjct 769337 GTTCTGGATCGAGCCGCCCGCGGCGATGATGAGGTTCTTCATGTTCTCGTCCCAG---AG 769281 Query 148226 GTTGAGCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAG 148285 ||| | ||| || || || || | | || ||||| || || || | ||| Sbjct 769280 ACCGAGGTTGATGAGATCGCGGAGCAACCAGGGGCAAACGACCTGGAAGTCACCAGAGAG 769221 Query 148286 CACGCGCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAAT 148345 ||| || || |||| | || | || || || ||||||| || | || Sbjct 769220 CACACGGCGGGCGTACAGCATCGAGGTGTAGGGCTCGAAGCACTCGTTCCACCCGAGGAT 769161 Query 148346 CTGCGCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATT 148405 ||||| ||||| || |||||||| ||| || || ||||||||||| | |||| | | Sbjct 769160 CTGCGAGGTCGAGGCGGTGGGCATCGGCGCGACGAGGAGCGAGTTGCGGACACCGTGCTG 769101 Query 148406 TTTTATTTTG-CGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCC-AC 148463 || || || ||| |||| |||||||||||||| | ||| | | || || || Sbjct 769100 CTTGATGTTCTCGCGG-AGAGGAGCCCAGTCCCAGAGGTCGGTCGG-GACGCGGCCCCAC 769043 Query 148464 ATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCT-GCCCTCGTACGAGCTGTACGGTCC 148522 | |||| ||| || | || | || |||| ||||||||| | |||| || Sbjct 769042 AGGTCGGGCTGGAGGAGACCCTTGG-AGATGGGCGAGCCCTCGTAGGTCTCGTACTTGCC 768984 Query 148523 GTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAAT 148582 | || || || ||||| ||||||||| ||| ||| ||| ||||||||| || Sbjct 768983 AAACTCCTGGGCGAGCTCGCACGACGCCTCGAGAGCGGCGTGGTAGATCGTCTCGAAGAT 768924 Query 148583 TTGCCTGTTGAGCAGCGCCGCCGACTCGCTT-TCGTACGGCATACGCAGCCGCACAAACG 148641 || |||||||| ||| | || | || ||| ||||||| ||||| || ||| | Sbjct 768923 CTGGATGTTGAGCT-CGCGGGCGGCGGGCGAGTCGAACGGCATGCGCAGAGCCATAAAGG 768865 Query 148642 CGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCG 148701 | ||||| || ||||| || || | ||| | || ||||| ||||| ||| ||| | Sbjct 768864 CATCGGCGAGACCCTGGACACCGAGGCCGACAGGGCGGTGACGCATGTTCGAGTTGCGGG 768805 Query 148702 CGCTCTCGAGCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCT 148761 | || || || |||| ||||||| ||||| | |||| || || || |||| Sbjct 768804 CCTCCTTGACAGGGTAGTAGTTGCGGGTGATGACCGTGTCGAGGTTCTTGGTGACGACCT 768745 Query 148762 TTGTAATTCTGCGCAGCAATTCAAAATCGTA---CTTGTCATCTACGATGC--ATCG-GT 148815 |||| || | | ||| | || ||||| | || || | | | | || | Sbjct 768744 TTGTGATCTCGTGGAGCTTCTTGAAGTCGTAGACCCTGCGCTCCATGTCGACAAACGCGG 768685 Query 148816 TCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGA 148875 | ||||| ||||| || ||||| ||||| ||| || ||||| |||||| | || Sbjct 768684 GGAGGGCGAGCGAGGCGAGGTTGCAGACGGCGACCTCGTCGGGGGCAGAGTACTCGATGA 768625 Query 148876 TCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGT 148935 |||||| ||| || ||| | ||||| ||| | || || || ||| ||| || Sbjct 768624 TCTCGGTGCAGAGGTTGGACGACTTGATGGTGCCGAGGTGCTGCTGGTTGGACTTTGCGT 768565 Query 148936 TGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATG- 148994 || ||||||||||| |||||| | || || || || || ||| | || | ||| Sbjct 768564 TGGCGGCGTCCTTGTAGAGCATGAAGGGGCCACCGGTCTCGGTCTGGGCCTCGAGGATGG 768505 Query 148995 -AACCGATGCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCT------CCTGCTC 149047 || | | || | |||||| |||| | || | |||||||| ||||||| Sbjct 768504 CAAACCAG--AGCTTCTGCGC-----CTTGATCGTCTT-GCGACCCTTGCCGGCCTGCTC 768453 Query 149048 GTATAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAA-TCGTCGAGACCGGGGCACT 149106 ||| || ||| ||| ||| ||||||| ||| ||| |||| |||||||||| Sbjct 768452 GTAGCTCTCGTAGAGCTTCTCAAACTGGTCGCCGT-GCACGTCGGCGAGGCCGGGGCACT 768394 Query 149107 TGTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGG 149166 | ||||||||||||| ||| ||||||| || | ||||||||||| || || || | Sbjct 768393 CGGCGGGGCACATGAGCGTCCAGTCGCCGTCGGCCTCGACGCGCTTCATGAAGAGGTCCG 768334 Query 149167 GCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGC---GCCCATGTTGC 149223 | |||||| ||||| | ||||| || || || | |||| | ||| ||| Sbjct 768333 AGATCCAGAGGGCGTAGAACAGGTCACGGGC---GCGGACTTCCTCCTTGCCGTGGTTCT 768277 Query 149224 GGCGCAGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCG 149283 | |||| ||| | | ||| ||||| |||||||| ||||| | ||| | ||| | | Sbjct 768276 TCCTGAGGTCGAGGAAGTCGAAGATGTCGGCGTGCCAAGGCTCGAGGTAGATCGCAAAGG 768217 Query 149284 CGCCCTTGCGC---TTGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAA 149340 | || ||| ||||| ||||||||||||| ||| | || || || | || | Sbjct 768216 CACCGGGACGCTTGTTGCCACCCTGGTCGACGTAGCGGGCAGTGGCGTCGTACGCGCGGA 768157 Query 149341 CCATAGGTTCAATGCCACTGGCAGT-GCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCT 149399 ||| || | || || | | ||| ||||| ||| | ||| ||| || Sbjct 768156 GCATCGGGACGATACCGTTCG-AGTAACCGTTGGTACCGGCGATGTAGGAGCCCTTGGCG 768098 Query 149400 CGCACTTTGTGCACGTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCA-GTC 149458 || | ||||| | || | ||||| || ||| || ||||||||| ||||| ||| Sbjct 768097 CGGATGTTGTGGATGTGAAGACCGATACCACCGGCGGTCTTTGAGATCTGAGCGCACGTC 768038 Query 149459 GCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGA 149518 ||||||| |||||| || || || |||| | |||||| | || |||||||| Sbjct 768037 -TTGAGCGTCTCGTAGATCCCGTCAATCGAGTCGTCCCTCATGGCGACGAGGAAGCACGA 767979 Query 149519 GCACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATA 149578 |||| || || |||||||||| ||| | ||||| |||||| || || || Sbjct 767978 CGACATCTGGGGGTTGGGCGTGCCGGCGTTGAAGAGCGTGGGCGAGGCGTGAGTGAAGTA 767919 Query 149579 TTTCTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCC 149638 | || ||| | | ||||| ||||| || ||| |||| || ||||| || Sbjct 767918 TCGCTCCGACATGAGGTTGTACGTCTCGATGACCTTGTCGATGTTGGATCCGTGGATACC 767859 Query 149639 TATGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAG 149698 | |||||| ||||| | ||| ||||| |||||||| | | ||| || ||| Sbjct 767858 GACGGCGACACGCATGATCATGTGCTGGGGTCGCTCGACAATCTTGCCGTTGATGCGGAG 767799 Query 149699 CAAGTA--GCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCG 149756 | ||| ||| || || |||||| |||||||||| ||||| ||||||||||| || Sbjct 767798 GAGGTACGACCG--CTCGAGCGTCTTGAAGCCAAAGTAGTTGTACGCAAAGTCGCGGTCG 767741 Query 149757 TGGTCAATGGCGGCGTCGA 149775 | | ||||| ||||| Sbjct 767740 TAGATGATGGCACTGTCGA 767722 >seq18 Length=823183 Score = 145 bits (160), Expect = 7e-30 Identities = 153/199 (77%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || ||||| ||| | ||| | | | |||||||||||||||| Sbjct 47010 GGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA-TCCTCGAGCTGCTTGC 47068 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| |||| || || |||||||| |||||||| || |||||||| |||||| || Sbjct 47069 CGGCGAAAATCAGGCGTTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGGATCTTGGCCT 47128 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | |||||| | | ||| || |||| |||| ||| ||||||||||||| Sbjct 47129 TGACGTTGTCGATCGTGTCCGACGACTCAACCTCGAGAGTGATGGTCTTGCCGGTCAGAG 47188 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || |||||||||||||| Sbjct 47189 TCTTGACGAAAATCTGCAT 47207 Score = 141 bits (156), Expect = 9e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 120639 CAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGT 120698 || |||||||||||| ||||| || |||||||| ||||| || ||||||||| || || Sbjct 29453 CAAGCACGCAAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGT 29512 Query 120699 CAGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAA 120758 ||||||||||||| ||| | |||||| |||| || | ||| || ||| || || Sbjct 29513 GAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATCGAGGCGAACGAGCCGGAGAA 29572 Query 120759 GAACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCT 120818 ||| | |||||| ||| ||||||||||| | |||||||| ||||| | | || Sbjct 29573 GAAGATGCCCTCGACGGCGGCAAAGGCGATGAGACGCTCGGCGAACGTGGAGCGCGTGTC 29632 Query 120819 GTCGATCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCAT 120866 | ||||||||| | ||||| ||||||| || | | |||||| || Sbjct 29633 GGTGATCCACTTGAGAGCCCATGCGGCCTTCTTCTGGATGCACGGGAT 29680 Score = 122 bits (134), Expect = 8e-23 Identities = 148/200 (74%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTG 133520 |||||||||||| || || ||||| ||| | || || || || || ||||||||| Sbjct 46782 GGTGGACTCTTTTTGGATGTTGTAGTCGGAGAGGGTTCGGCCG--TCTTCCAGCTGCTTG 46839 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || ||| ||||||| || || ||||| || |||||||| |||||||| |||||| | Sbjct 46840 CCGGCGAAAATGAGACGTTGTTGGTCTGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCC 46899 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 |||| | || | |||||||| | ||| || |||| |||| || ||||| || || Sbjct 46900 TTGACATTGTCGATCGTGTCGGACGACTCGACCTCGAGCGTGATCGTCTTGCCCGTGAGG 46959 Query 133641 GTTTTTACGAAAATCTGCAT 133660 || || ||||| |||||||| Sbjct 46960 GTCTTGACGAAGATCTGCAT 46979 Score = 113 bits (124), Expect = 4e-20 Identities = 130/175 (74%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || ||||| |||| || || ||||||||||||||||||| Sbjct 45937 GTCGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTCCTTCCGTCCTCGAGCTGCTTGCCC 45996 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || || ||||| ||||| || ||||| || |||||||| |||||| |||| Sbjct 45997 GCGAAGATCAGACGCTGTTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTCGCCTTG 46056 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCA 133638 | | |||| ||||| | | ||| || |||| ||||| || |||||||||| Sbjct 46057 ACATTGTCAATGGTGTCAGAAGACTCGACCTCGAGGGTGATCGTCTTGCCGGTCA 46111 Score = 104 bits (114), Expect = 2e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||||||||||||||| ||| | || || ||||||||||| ||||||||||| ||||| Sbjct 47339 GTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGGATGCCCTCCTT 47398 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| |||||| ||||| | || | ||||| | | ||| || |||| ||||| Sbjct 47399 GTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACTTCGAGGGTGAT 47458 Query 133625 GGTTTTGCCGGTCAG 133639 ||| || ||||| || Sbjct 47459 GGTCTTTCCGGTGAG 47473 Score = 98.7 bits (108), Expect = 1e-15 Identities = 129/177 (73%), Gaps = 4/177 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 || ||||| ||||| || ||||| || | | | | |||| ||| ||||||||||||| Sbjct 46219 GTCGACTCCTTCTGGATGTTGTAGTC--CGAAAGGGTACGACCGTCTTCGAGCTGCTTGC 46276 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | ||||| ||||||||||| || ||||| || |||||||| |||||| || Sbjct 46277 CGGCGAAGATGAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTCGCCT 46336 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCA 133638 ||| | || | ||||| | | ||| || |||| ||| | ||| || || |||| Sbjct 46337 TGACGTTGTCGATGGTGTCAGACGACTCGACCTCGAGGGTAATGGTCTTTCCCGTCA 46393 >seq3 Length=1717572 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||||||||||||||| ||| ||||||| ||||| ||||| || ||||| || ||||| Sbjct 192642 GTCCTCGAGCTGCTTGCCGGCGAAAATGAGACGCTGTTGGTCCGGGGGGATACCCTCCTT 192701 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| |||||| ||||| | || | ||||| | || |||||| |||| ||||| Sbjct 192702 GTCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCACCTCGAGGGTGAT 192761 Query 133625 GGTTTTGCCGGTCAGA 133640 ||| || ||||| ||| Sbjct 192762 GGTCTTCCCGGTGAGA 192777 >seq5 Length=1498571 Score = 102 bits (112), Expect = 8e-17 Identities = 131/179 (73%), Gaps = 4/179 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTG 133520 ||| ||||| ||||| || ||||| || | || || || ||||||||||||||| Sbjct 692066 GGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTTCGGCCG--TCCTCGAGCTGCTTG 692123 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 |||||| | || || ||||| ||||| || ||||| || |||||||| |||||| | Sbjct 692124 CCCGCGAAGATCAGGCGCTGTTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGCC 692183 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAG 133639 |||| | || | ||||||| | |||||| |||| ||||| || ||||| || || Sbjct 692184 TTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATCGTCTTGCCCGTAAG 692242 >seq13 Length=1063984 Score = 86.0 bits (94), Expect = 6e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 116506 AGCAACGGCTGCACCTCCGCCGGCGAACACTTCAACCCCACCGGCCAGGACCACGGCGCG 116565 |||||||||||||||||||| || | |||||||||||| |||| || ||||||||| Sbjct 956506 AGCAACGGCTGCACCTCCGCGGGAGCCCACTTCAACCCCCACGGCAAGAGCCACGGCGCC 956565 Query 116566 CCCAACGCCGCCGTTCGTCACGTCGGTGACCTGGG 116600 ||| || | ||| | |||||||||||||| || Sbjct 956566 CCCTCCGACACCGAGAGGCACGTCGGTGACCTCGG 956600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483420467648200