Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20sp._20JCM_2024511_20[genbank_20GCA_5F001600855.1_2020 16-03-01] 55 sequences; 28,180,937 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq14 143 3e-29 seq18 84.2 2e-11 >seq14 Length=977059 Score = 143 bits (158), Expect = 3e-29 Identities = 755/1184 (64%), Gaps = 45/1184 (4%) Strand=Plus/Minus Query 147247 TCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATA 147306 ||| | ||||| |||||| || |||||||||||| | |||||||| ||||| ||||| | Sbjct 768892 TCGAACGGCATGCGCAGAGCCATAAAGGCATCGGCGAGACCCTGGACACCGAGGCCGACA 768833 Query 147307 GGTCGATGC----TTTTCG--TTGCTGCGCTTCGCGCTCGCTATGGGATAGTGGTTGCGA 147360 || || || | |||| |||| | || || || | | || |||| |||||| Sbjct 768832 GGGCGGTGACGCATGTTCGAGTTGCGG-GCCTC---CTTGACAGGG--TAGTAGTTGCGG 768779 Query 147361 TCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAA 147420 || | | ||| |||||| || || || || || | ||| |||| ||| Sbjct 768778 GTGATGACCGTGTCGAGGTTCTTGGTGACGACCTTTGTGATCTCGTGGAGCTTCTTGAAG 768719 Query 147421 TCATAAGTCCCGT-CT-----TCGACACGTACGCATTGGTTCACGGCGATAGACGCCAGA 147474 || || || | || |||||| |||| | | ||||| || || || Sbjct 768718 TCGTAGACCCTGCGCTCCATGTCGACAA--ACGCGGGG----AGGGCGAGCGAGGCGAGG 768665 Query 147475 TTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTG 147534 ||||||||||| ||| |||| | | ||||| | ||| |||| ||| |||||| Sbjct 768664 TTGCAGACGGCGACCTCGTCGGGGGCAGAGTACTCGATGATCTCGGTGCAGAGGTTGGAC 768605 Query 147535 CATTTTATGACTCCCAAATTTTGCTGATTGCT-TTTCCGATTGCACGCGTCTTTGAAGAG 147593 | || ||| || | | ||||| ||| ||| || | || ||||| ||| |||| Sbjct 768604 GACTTGATGGTGCCGAGGTGCTGCTGGTTGGACTTTGCGTTGGCG-GCGTCCTTGTAGAG 768546 Query 147594 CATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT---AAACCTATGCAGGTCCTG 147650 |||| | || || ||||||||| || | || | ||| ||||| || | ||| Sbjct 768545 CATGAAGGGGCCACCGGTCTCGGTCTGGGCCTCGAGGATGGCAAACCAGAGC---TTCTG 768489 Query 147651 CGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAA 147710 ||| | | || ||| ||| | | ||||| | |||||| | | |||||| Sbjct 768488 CGCCTTGATCGTCTTGCGACCCTTGCCGGCCTGCTCGTAGCTCTCGTAGAGCTTCTCAAA 768429 Query 147711 CTCGTCGCCGTAGCAA-TCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACA 147769 || |||||||| ||| ||||| |||||||| |||| || ||||| |||| ||| Sbjct 768428 CTGGTCGCCGT-GCACGTCGGCGAGGCCGGGGCACTCGGCGGGGCACATGAGCGTCCAGT 768370 Query 147770 TGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGAT 147829 | |||| || | ||||| ||| || || |||| | ||| || ||||| | || | Sbjct 768369 CGCCGTCGGCCTCGACGCGCTTCATGAAGAGGTCCGAGATCCAGAGGGCGTAGAACAGGT 768310 Query 147830 CGCGCGCTTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAATTAAGCACGCTATAGATGT 147889 | || || | ||||| ||| ||| | | | || | | |||||| Sbjct 768309 CACGGGCGCGGACTTCCTCCTTGCCGTGGTTCTTCCTGAGGTCGAGGAAGTCGAAGATGT 768250 Query 147890 CGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCTGGT 147946 |||||||||| || || | ||||| || | ||||| |||| || || ||||||| Sbjct 768249 CGGCGTGCCAAGGCTCGAGGTAGATCGCAAAGGCACCGGGACGCTTGTTGCCACCCTGGT 768190 Query 147947 CGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGT-G 148005 |||| | ||| | || || || |||| | ||| || | | ||| ||| ||| Sbjct 768189 CGACGTAGCGGGCAGTGGCGTCGTACGCGCGGAGCATCGGGACGATACCGTTCG-AGTAA 768131 Query 148006 CCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATG 148065 |||||||| ||| | | ||| ||| || | | ||| | || || || || Sbjct 768130 CCGTTGGTACCGGCGATGTAGGAGCCCTTGGCGCGGATGTTGTGGATGTGAAGACCGATA 768071 Query 148066 CCGCCGCCGTACTTTGATATGGCAGCGCAATCGCC--CAATGTCGTGTAGATGCCGTCGA 148123 || ||| || |||||| || |||||| || | | ||| |||||| ||||| | Sbjct 768070 CCACCGGCGGTCTTTGAGATCTGAGCGCA--CGTCTTGAGCGTCTCGTAGATCCCGTCAA 768013 Query 148124 TGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCG 148183 | ||||| | | | | | | || ||||| |||| || || | |||| || | Sbjct 768012 TCGAGTCGTCCCTCATGGCGACGAGGAAGCACGACGACATCTGGGGGTTGGGCGTGCCGG 767953 Query 148184 CCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCT 148243 | ||| || ||||| ||||| || || || | ||| | | ||||||| Sbjct 767952 CGTTGAAGAGCGTGGGCGAGGCGTGAGTGAAGTATCGCTCCGACATGAGGTTGTACGTCT 767893 Query 148244 CAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCT 148303 | || | | ||||||| | ||||| || || | ||||| ||||||| |||||||| Sbjct 767892 CGATGACCTTGTCGATGTTGGATCCGTGGATACCGACGGCGACACGCATGATCATGTGCT 767833 Query 148304 GTGGTCGTTCGGCAA-CTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTG 148362 | ||||| ||| ||| |||| |||||| ||| || || ||||| || ||| Sbjct 767832 GGGGTCGCTCGACAATCTTG-CCGTTGATGCGGAGGAGGTACGACCGCTCGAGCGTCTTG 767774 Query 148363 TAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGC 148406 | |||||||| ||||| |||| || | ||||| |||||| Sbjct 767773 AAGCCAAAGTAGTTGTACGCAAAGTCGCGGTCGTAGATGATGGC 767730 >seq18 Length=823183 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||||||||| |||||||||||| | ||| || ||||| ||||| || |||| Sbjct 46786 GACTCTTTTTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCTTCCAGCTGCTTGCCGGCG 46845 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || ||||| ||||| ||||| || ||||| || || || || || || | Sbjct 46846 AAAATGAGACGTTGTTGGTCTGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACA 46905 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || |||| || ||| || |||| ||| | ||| || || || || || || Sbjct 46906 TTGTCGATCGTGTCGGACGACTCGACCTCGAGCGTGATCGTCTTGCCCGTGAGGGTCTTG 46965 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 46966 ACGAAGATCTGCAT 46979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476610872329800