Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20sp._20JCM_2024511_20[genbank_20GCA_5F001600855.1_2020 16-03-01] 55 sequences; 28,180,937 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq14 210 3e-48 seq18 167 3e-35 seq7 102 1e-15 >seq14 Length=977059 Score = 210 bits (232), Expect = 3e-48 Identities = 356/508 (70%), Gaps = 31/508 (6%) Strand=Plus/Plus Query 259683 ACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTTG 259742 ||||||| || |||||| ||||||| | ||| ||| ||||||| ||| ||||||| Sbjct 767710 ACAAGGACGTTCTCGACAGTGCCATCATCTACGACCGCGACTTTGCGTACAACTACTTTG 767769 Query 259743 GTCTGGCGAC-CTTGCGCCGGTCCTACCTG------ACCAAAGTGCGCGATATTGTCGTC 259795 | | ||| || | || |||| ||||| | ||| | || | ||||||| Sbjct 767770 GCTTCAAGACGCTCGAGC-GGTCGTACCTCCTCCGCATCAACG---GCAAGATTGTCG-- 767823 Query 259796 GAGCGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTC 259855 |||| |||||| | ||| |||||||||||||| | || | || | || || || Sbjct 767824 -AGCGACCCCAGCACATGATCATGCGTGTCGCCGTCGGTATCCACGGAT---CCAACATC 767879 Query 259856 GACAATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCAGTTGTTCACC 259915 ||||| | | ||| |||| | |||| ||||||| ||| | ||||| Sbjct 767880 GACAAGGTCATCGAG-ACGTACA----ACCT-------CATGTCGGAGCGATACTTCAC- 767926 Query 259916 TCA-GCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTT 259974 ||| || ||||||||||||| || ||||||||||| ||| |||| ||||||||||| Sbjct 767927 TCACGCCTCGCCCACGCTCTTCAACGCCGGCACGCCCAACCCCCAGATGTCGTCGTGCTT 767986 Query 259975 TCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGC 260034 || | | ||||| || ||| ||||| || || ||||| || ||||||||| |||||| Sbjct 767987 CCTCGTCGCCATGAGGGACGACTCGATTGACGGGATCTACGAGACGCTCAAGACGTGCGC 768046 Query 260035 GCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGG 260094 | ||||| ||| | ||||| || |||||| || | ||||| | |||||| ||| Sbjct 768047 TCAGATCTCAAAGACCGCCGGTGGTATCGGTCTTCACATCCACAACATCCGCGCCAAGGG 768106 Query 260095 CGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTT 260154 | ||||| | || || |||||||| | || ||||| | || || ||||| |||| | Sbjct 768107 CTCCTACATCGCCGGTACCAACGGTTACTCGAACGGTATCGTCCCGATGCTCCGCGCGTA 768166 Query 260155 TAACGACACGGCGCGCTACGTCGACCAG 260182 ||| ||| || ||||||||||||||| Sbjct 768167 CGACGCCACTGCCCGCTACGTCGACCAG 768194 Score = 147 bits (162), Expect = 3e-29 Identities = 341/511 (67%), Gaps = 14/511 (3%) Strand=Plus/Plus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 || ||| |||||| || |||||||| |||||| || || |||||||||||| || Sbjct 768195 GGTGGCAACAAGCGTCCCGGTGCCTTTGCGATCTACCTCGAGCCTTGGCACGCCGACATC 768254 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 || ||| || ||||||| |||||||||||||| |||| ||| |||| || Sbjct 768255 TTCGACTTCCTCGACCTCAGGAAGAACCACGGCAA-GGAG-----GAAGTCCGCGCCCGT 768308 Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGGCCGC 261967 || || || |||| ||| |||| | ||||| || ||| ||| | | | ||| | || Sbjct 768309 GACCTGTTCTACGCCCTCTGGATCTCGGACCTCTTCATGAAGCGCGTCGAGGCCGACGGC 768368 Query 261968 GACTGGTCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCTGCACGA-ATGCTATGGCGCGGC 262026 |||||| ||||| | ||||| ||||| |||||||| ||| ||| | |||| Sbjct 768369 GACTGGACGCTCATGTGCCCCGCCGAGTGCCCCGGCCTCGCCGACGTGC-ACGGCGACCA 768427 Query 262027 CTTTGACGCCCTCTA--TGAGNNNNNNNNNNNNNNNNNNNNNNCGC-GGACCGTCGTGCC 262083 ||||| ||||| ||| ||| ||| || | Sbjct 768428 GTTTGAGAAGCTCTACGAGAGCTACGAGCAGGCCGGCAAGGGTCGCAAGACGATCAAG-G 768486 Query 262084 CGCACGACAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACAT 262143 |||| || || |||||| ||||| ||| |||||| | ||||||||| |||| ||| Sbjct 768487 CGCA-GA-AGCTCTGGTTTGCCATCCTCGAGGCCCAGACCGAGACCGGTGGCCCCTTCAT 768544 Query 262144 GGTCTACAAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGA 262203 | ||||||||||||||| |||| | |||||||||| |||| ||||||| | Sbjct 768545 GCTCTACAAGGACGCCGCCAACGCAAAGTCCAACCAGCAGCACCTCGGCACCATCAAGTC 768604 Query 262204 GGCCAACCTGTGCACCGAGATCGTCCAGTTTTCGTCGCCCACCGAGGCAAGTGTGTGCAA 262263 | ||||||| |||||||||||| || ||| || | ||| ||||| || ||||| Sbjct 768605 GTCCAACCTCTGCACCGAGATCATCGAGTACTCTGCCCCCGACGAGGTCGCCGTCTGCAA 768664 Query 262264 CCTCTCGAGCGTGGCCCTGCCCAAGTTTGTC 262294 |||| | | ||||| ||| ||||||| Sbjct 768665 CCTCGCCTCGCTCGCCCTCCCCGCGTTTGTC 768695 >seq18 Length=823183 Score = 167 bits (184), Expect = 3e-35 Identities = 200/264 (76%), Gaps = 7/264 (3%) Strand=Plus/Minus Query 1456015 GAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGAC-CCGGT 1456073 || ||||||||||| || || ||||| ||||| |||||||| ||| |||||||| ||| Sbjct 29773 GAGAACATCCACTCCGAGACTTACTCCCTCCTCATCGACACGTACATCAAGGACGCCGCC 29714 Query 1456074 CGA-GAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCG 1456132 || || | |||| || ||||||||||| | |||| | ||| ||||||| Sbjct 29713 CGCCGATCGT--ACCTGTTCGAGGCCATCGACACCATCCCGTGCATCCAGAAGAAGGCCG 29656 Query 1456133 ACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGG 1456192 ||||| | |||||||||| | | | || || || || |||||||| ||| ||| Sbjct 29655 CATGGGCTCTCAAGTGGATCACCGACACGCGC-TCCACG-TTCGCCGAGCGTCTCATCGC 29598 Query 1456193 CTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAA 1456251 ||||||||| |||||||||||||| ||||| ||| ||| | | ||||| |||||||| Sbjct 29597 CTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGTTCGCCTCGATCTTCTGGCTCAA 29538 Query 1456252 GAAGCGCGGCCTCATGCCCGGTCT 1456275 ||||||||||||||||||||| || Sbjct 29537 GAAGCGCGGCCTCATGCCCGGCCT 29514 Score = 120 bits (132), Expect = 4e-21 Identities = 128/163 (79%), Gaps = 7/163 (4%) Strand=Plus/Minus Query 1456581 CGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCG 1456640 ||||||||||||||||| ||| |||||||||||| ||||| || ||| ||||||||||| Sbjct 29220 CGCTCATCGGCATGAACTCCAA-GCTCATGTGCCAATACATCGAGTTT-GTCGCCGACCG 29163 Query 1456641 CCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGC--CAACCCGTTCCCATG 1456698 ||||||| || |||||| || | ||| || | ||| | |||||| ||| | Sbjct 29162 TCTGCTCGTCGCCCTCGGCAACG-ACAAGATCTG--GAACGCCACCAACCCCTTCGACTT 29106 Query 1456699 GATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741 |||||| ||||||||||| |||||||| | ||||| |||||| Sbjct 29105 CATGGAGATGATCTCGCTCCAGGGCAAGGCGAACTTCTTCGAG 29063 >seq7 Length=1401232 Score = 102 bits (112), Expect = 1e-15 Identities = 134/186 (72%), Gaps = 10/186 (5%) Strand=Plus/Minus Query 724962 AACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACC 725021 |||||| ||||| | ||| | |||||||| ||| ||||| |||| ||||||| || Sbjct 1063527 AACAAGGCCATGGCCATCCTCAACTCGTTCGTCTCGGACATCTTCGAGCGCATCGCTTCC 1063468 Query 725022 GAGGCC-----GGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGA 725076 |||||| | |||||| | | |||| | || || ||| | ||||||| Sbjct 1063467 GAGGCCTCCAAGCTCGCCTCG-----TACAACCACCGTTCGACCATCTCTTCCCGCGAGA 1063413 Query 725077 TCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGG 725136 |||||||| |||| ||||| ||| | | ||| || || ||| ||||||| ||||||||| Sbjct 1063412 TCCAGACCTCCGTCCGCCTCATCCTCCCCGGAGAGCTTTCCAAGCACGCCATCTCCGAGG 1063353 Query 725137 GCACCA 725142 |||||| Sbjct 1063352 GCACCA 1063347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177805895148910