Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20sp._20JCM_2024511_20[genbank_20GCA_5F001600855.1_2020 16-03-01] 55 sequences; 28,180,937 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq18 120 3e-22 >seq18 Length=823183 Score = 120 bits (132), Expect = 3e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| ||||| |||||||| |||| | |||||| |||| ||||||||||| || || || Sbjct 46788 CTCTTTTTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCTTCCAGCTGCTTGCCGGCGAA 46847 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || || ||||| | || | || |||||||||| |||||| ||| | | | Sbjct 46848 AATGAGACGTTGTTGGTCTGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACATT 46907 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||||| ||| || ||||| | ||||||||| || ||||| | || || || Sbjct 46908 GTCGATCGTGTCGGACGACTCGACCTCGAGCGTGATCGTCTTGCCCGTGAGGGTCTTGAC 46967 Query 35725 AAATATCTGCATTC 35738 || |||||||||| Sbjct 46968 GAAGATCTGCATTC 46981 Score = 82.4 bits (90), Expect = 7e-11 Identities = 123/172 (72%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | | ||| || |||| || |||||||| || || || Sbjct 46224 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGACCGTCTTCGAGCTGCTTGCCGGCGAA 46283 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||||| || | | |||||||||| |||||| ||| | || Sbjct 46284 GATGAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTCGCCTTGA-CGT 46342 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAA 35715 || | | ||||| ||| || ||||| | || || || || |||||||| Sbjct 46343 TGTCGATGGTGTCAGACGACTCGACCTCGAGGGTAATGGTCTTTCCCGTCAA 46394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450793290079400