Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20sp._20JCM_2024511_20[genbank_20GCA_5F001600855.1_2020 16-03-01] 55 sequences; 28,180,937 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq18 134 1e-26 seq5 93.3 4e-14 >seq18 Length=823183 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| || | ||| || | |||||||| || || || ||||| || |||||||||||| Sbjct 46979 TTCCACCGCGGAGACGAAGAACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGG 47038 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | |||| | || |||||||| ||||| || ||||||| || ||||| || || | Sbjct 47039 AGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATCAGGCGTTGCTGGTCCGGAG 47098 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || || || || || || || || ||||| ||| | ||||| ||||| || | Sbjct 47099 GGATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGACGACTCAA 47158 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | |||||||| ||||| || ||||| | ||| || |||||||| ||||| Sbjct 47159 CCTCGAGAGTGATGGTCTTGCCGGTCAGAGTCTTGACGAAAATCTGCAT 47207 Score = 123 bits (136), Expect = 3e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | |||||| | |||||||| || ||||| || ||||| |||||||||||| Sbjct 46753 CCACCACGGAGTCGGAGGACGAGGTGGAGGGTGGACTCTTTTTGGATGTTGTAGTCGGAG 46812 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| || ||||| ||||| || ||||| | ||| || || || ||||| Sbjct 46813 AGGGTTCGGCCGTCTTCCAGCTGCTTGCCGGCGAAAATGAGACGTTGTTGGTCTGGCGGG 46872 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || ||||| ||| | ||||||||||| || || Sbjct 46873 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGACATTGTCGATCGTGTCGGACGACTCGACC 46932 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 ||||| || || || || || || | || || ||||| || |||||| Sbjct 46933 TCGAGCGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATT 46980 Score = 114 bits (126), Expect = 1e-20 Identities = 150/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| || | ||||| | || ||||| ||||| || ||||| || ||||||||||| Sbjct 46187 TTCCACCACGCAGTCGGAGAACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCG 46246 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || ||| || ||| |||||||| ||||| || || || | ||||||||| || || | Sbjct 46247 AAAGGGTACGACCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGG 46306 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || || || || || || || || ||||| ||| | ||||| ||||| || | Sbjct 46307 GGATACCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCAGACGACTCGA 46366 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAA 134692 | ||||| |||||||| || || || || Sbjct 46367 CCTCGAGGGTAATGGTCTTTCCCGTCAA 46394 Score = 100 bits (110), Expect = 3e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 |||||||| ||||| || ||||| || ||||||||||||| | ||| ||| ||| Sbjct 45925 ACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTCCTTCCGTCCTCG 45984 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||| || || |||| |||||| || || || || || || || || || || Sbjct 45985 AGCTGCTTGCCCGCGAAGATCAGACGCTGTTGGTCCGGGGGGATACCCTCCTTGTCCTGG 46044 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || ||||| ||| | ||||| || || || || ||||| || || || || Sbjct 46045 ATCTTCGCCTTGACATTGTCAATGGTGTCAGAAGACTCGACCTCGAGGGTGATCGTCTTG 46104 Query 134685 CCGGTTAA 134692 ||||| || Sbjct 46105 CCGGTCAA 46112 Score = 96.9 bits (106), Expect = 4e-15 Identities = 95/120 (79%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGT-CGCCAACGGTGTG 134554 ||||| | |||||||| ||||| || ||||| || |||||||||| || ||| |||| | Sbjct 46483 AGTCGGAGAACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGACAA-GGTGCG 46541 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 | ||| |||||||| ||||| ||||| || | |||||||| || ||||| ||||| || Sbjct 46542 ACCGTCCTCGAGCTGCTTGCCGGCAAAGATAAGGCGCTGCTGGTCTGGCGGAATGCCCTC 46601 >seq5 Length=1498571 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||||||||| || || || ||||| || ||||||||||| | ||| | Sbjct 692046 AGACGGAGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTTCGG 692105 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| |||||||| ||||| || || |||| ||||| || || || || || || || Sbjct 692106 CCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGTTGGTCCGGGGGGATACCCTCC 692165 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || ||||| ||| | |||||||| || ||||| ||||| || Sbjct 692166 TTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTG 692225 Query 134676 ATGGTTTTACCGGT 134689 || || || || || Sbjct 692226 ATCGTCTTGCCCGT 692239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505398052538600