Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20sp._20JCM_2024511_20[genbank_20GCA_5F001600855.1_2020 16-03-01] 55 sequences; 28,180,937 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq14 255 7e-63 seq18 140 4e-28 seq1 102 1e-16 seq3 86.0 8e-12 >seq14 Length=977059 Score = 255 bits (282), Expect = 7e-63 Identities = 898/1385 (65%), Gaps = 37/1385 (3%) Strand=Plus/Minus Query 118194 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATG 118253 ||||| ||||| |||||||| || || | ||| || | || ||||| |||||||| Sbjct 769195 GTGTAGGGCTCGAAGCACTCGTTCCACCCGAGGATCTGCGAGGTCGAGGCGGTGGGCATC 769136 Query 118254 GGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCC 118313 || || | ||| || ||| |||| ||| | | | | ||| || ||||| || Sbjct 769135 GGCGCGACGAGGAGCGAGTTGCGGACACCGTGCTGCTTGATGTTCTCGCGGAGAGGAGCC 769076 Query 118314 CAGTCGTAGTTGAGCTTTGTCTCCCCCTG---CCACATATCAAACTGGAGGATACCTTGG 118370 ||||| || || | ||| | | ||||| || |||||||| ||| | | Sbjct 769075 CAGTCCCAG---AGGTCGGTCGGGACGCGGCCCCACAGGTCGGGCTGGAGGAGACCCTTG 769019 Query 118371 GACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCC---GCCAATTCGGAG 118427 || ||||| ||||| | ||||| || ||| || |||| || | ||| | Sbjct 769018 GAGATGGGCGAGCCCTCGTAGGTCTCGTACTTGCC---AAACTCCTGGGCGAGCTCGCAC 768962 Query 118428 CTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCC 118487 ||||||||| || ||||| || || || || || || | || | | ||| Sbjct 768961 GACGCCTCGAGAGCGGCGTGGTAGATCGTCTCGAAGATCTGGATGTTGAGCTCGCGGGCG 768902 Query 118488 TCGTCGGAATCAAACGCGAGTCGGCACAAA-ATAAATACATCCGCGAGACCTTGGACACC 118546 || || || |||| | || || | ||||| |||| |||||||| |||||||| Sbjct 768901 GCGGGCGAGTCGAACGGCATGCG-CAGAGCCATAAAGGCATCGGCGAGACCCTGGACACC 768843 Query 118547 GAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACGGGATAAAAATT 118606 |||||| | ||||| || | ||| || || || || || || || || || | || Sbjct 768842 GAGGCCGACAGGGCGGTGACGCATGTTCGAGTTGCGGGCCTCCTTGACAGGGTAGTAGTT 768783 Query 118607 CCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTC 118666 | ||| ||| | | || || |||||||| ||||||||||| || || ||||| | Sbjct 768782 GCGGGTGATGACCGTGTCGAGGTTCTTGGTGACGACCTTTGTGATCTCGTGGAGCTTCTT 768723 Query 118667 GTAATCAAAA---CTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAG 118723 | | || | ||||| ||| | |||| || || ||||||| || || || Sbjct 768722 GAAGTCGTAGACCCTGCG---CTCCATGTCGACAAACGCGGGGAGGGCGAGCGAGGCGAG 768666 Query 118724 ATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGA 118783 || || || | | ||| || ||| |||||| || || || ||||| | ||| || Sbjct 768665 GTTGCAGACGGCGACCTCGTCGGGGGCAGAGTACTCGATGATCTCGGTGCAGAGGTTGGA 768606 Query 118784 ACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAG 118843 ||| |||||||| | || || || || ||||||| ||| || |||||||| || Sbjct 768605 CGACTTGATGGTGCCGAGGTGCTGCTGGTTGGACTTTGCGTTGGCGGCGTCCTTGTAGAG 768546 Query 118844 CATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCAG 118902 |||| | || || ||||| || |||| || ||| || || ||||| | || || Sbjct 768545 CATGAAGGGGCCACCGGTCTCGGTCTGGGCCTCGAGGATGGCAAACCAGAGCTTCTGCGC 768486 Query 118903 CTGGCACAG-TGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAAC 118961 || | | | ||| || ||| || | ||||| | |||||| |||||| Sbjct 768485 CTTGATCGTCTTGCGACC-CTTGCCGGCCTGC-TCGTAGCTCTCGTAGAGCTTCTCAAAC 768428 Query 118962 TCTTCACC---CACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCAT 119018 | || || |||| || | ||| || || || | ||||| | ||| | ||| Sbjct 768427 TGGTCGCCGTGCACG---TCGGCGAGGCCGGGGCACTCGGCGGGGCACATGAGCGTCCAG 768371 Query 119019 TGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGA 119078 | || | |||| || ||||||||||||||||| | ||||||||| || |||| || Sbjct 768370 TCGCCGTCGGCCTCGACGCGCTTCATGAAGAGGTCCGAGATCCAGAGGGCGTAGAACAGG 768311 Query 119079 TCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATA 119138 || || ||| |||| || | || || || | | || | ||||| | ||| Sbjct 768310 TCACGGGCGCGGACTTCCTCCTTGCCGTGGTTCTTCCTGAGGTCGAGGAAGTCGAAGATG 768251 Query 119139 TCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACGA---CCAGCCTGG 119195 || |||||||| || || ||||| | ||| | | || ||| ||| ||||| Sbjct 768250 TCGGCGTGCCAAGGCTCGAGGTAGATCGCAAAGGCACCGGGACGCTTGTTGCCACCCTGG 768191 Query 119196 TTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGG 119255 | || || | |||||||||| | | || ||||| || | |||||| | || | Sbjct 768190 TCGACGTAGCGGGCAGTGGCGTCGTACGCGCGGAGCATCGGGACGATACCGTTCGAGTAA 768131 Query 119256 CCATTTGTCCCC-CGAA-TACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAA 119313 || || || || ||| || ||| | | |||| | || | ||||||||| | ||| | Sbjct 768130 CCGTTGGTACCGGCGATGTAGGAGCCCT--TGGCGCGGATGTTGTGGATGTGAAGACCGA 768073 Query 119314 TACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGA 119373 |||| || || ||||||||| || |||||| | |||| | |||||||||| || | Sbjct 768072 TACCACCGGCGGTCTTTGAGATCTGAGCGCACGTCTTGAGCGTCTCGTAGATCCCGTCAA 768013 Query 119374 TCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAG 119433 ||||||| || | | |||| ||||||||| |||||| || || |||| || || | Sbjct 768012 TCGAGTCGTCCCTCATGGCGACGAGGAAGCACGACGACATCTGGGGGTTGGGCGTGCCGG 767953 Query 119434 CGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTGTCGTAGGTCT 119493 |||||||||| || || | ||||| |||| | | ||||| || ||| |||| Sbjct 767952 CGTTGAAGAGCGTGGGCGAGGCGTGAGTGAAGTATCGCTCCGACATGAGGTTGTACGTCT 767893 Query 119494 CCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATT 119553 | | ||| | |||| ||||| ||||||| | ||| ||||| | ||||| | Sbjct 767892 CGATGACCTTGTCGATGTTGGATCCGTGGATACCGACGGCGACACGCATGATCATGTGCT 767833 Query 119554 GGGGT 119558 ||||| Sbjct 767832 GGGGT 767828 >seq18 Length=823183 Score = 140 bits (154), Expect = 4e-28 Identities = 181/246 (74%), Gaps = 8/246 (3%) Strand=Plus/Plus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| || |||||||||||||||||| |||||||| || || |||||| || || Sbjct 29460 GCAAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGTGAGGCCG 29519 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 |||||||| || |||||||| | |||||| |||| || ||||| ||||||||||| Sbjct 29520 GGCATGAGGCCGCGCTTCTTGAGCCAGAAGATCGAGGCGAACGAGCCGGAGAAGAAGATG 29579 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAA---GGAGCGGGACTTTGTATCA 130192 ||||| || || || || | ||||||||| || || |||||| | | || Sbjct 29580 CCCTCGACGGCGGCAAAGGCGATGAGACGCTCGGCGAACGTGGAGCGCGTGTCGGT---G 29636 Query 130193 AACCACTTCATCGCCCACTGC-GCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTC 130251 | |||||| | ||||| ||| ||||| |||| ||| ||||||| ||| | ||| || || Sbjct 29637 ATCCACTTGAGAGCCCA-TGCGGCCTTCTTCTGGATGCACGGGATGGTGTCGATGGCCTC 29695 Query 130252 AAAGAG 130257 || || Sbjct 29696 GAACAG 29701 >seq1 Length=2178591 Score = 102 bits (112), Expect = 1e-16 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 |||||||| || ||| | ||||||||||| || || |||||||| ||||||||| Sbjct 1447960 CCCTCGTCCCGACTGATCAACTCATTCGAGAACGTCAAGCCCGGCATGAGCCCCCGCTTC 1448019 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 ||||||||||| || || || || || ||||| ||||||||||| ||||| ||||| Sbjct 1448020 TTCAACCAGAAGATGGCTGCGAACGACCCGGAGAAAAAGATCCCCTCGACACAAGCGAAG 1448079 Query 130154 GCAAAGAGACG 130164 || | ||| || Sbjct 1448080 GCGACGAGTCG 1448090 >seq3 Length=1717572 Score = 86.0 bits (94), Expect = 8e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 179080 AGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATATTGTTTGAACCCATGTAG 179139 ||||| || ||||||||||| || | || | ||||| ||||| |||| || Sbjct 32405 AGACGAGTACCAAATTGACCGTTAGGTGCGAGCAAGTTGATGTTGTTGCTTCCCACAAAG 32346 Query 179140 TCATTGGCCAACTTGACAATCGTATCCGCGAGGGAGACTTCACCGTGATGGTAAGCCGAC 179199 | ||||| |||||||| ||| |||||| || ||||| ||||| |||| | Sbjct 32345 CTCTGCGCCAAACCCACAATCGTCGCCGTGAGGGACTGCTCGCCGTGGTGGTAGGCCGTC 32286 Query 179200 TTGTCCGCCACATATGCCGCCAACTGCGCCACCTTCATCTCATCCTTGAGGTTCTTGTGG 179259 || |||| |||||| | |||| ||| ||||| || ||||| | ||||||| | | Sbjct 32285 TTCTCCGACACATAACCAGCCAGCTGTGCCACTTTGATCTCCTTGGTGAGGTTGCGCTTG 32226 Query 179260 AAGCACGCATACATCACCTTTCTTTGTGAAGGCTTGAGGCCGTCGGC 179306 || || || ||| ||||||| ||| ||| || || || ||||| Sbjct 32225 AAACAACCAAACAAGACCTTTCGTTGACCAGGTTTCAGTCCATCGGC 32179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434774825800