Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20sp._20JCM_2024511_20[genbank_20GCA_5F001600855.1_2020 16-03-01] 55 sequences; 28,180,937 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq2 138 3e-27 seq18 125 2e-23 >seq2 Length=1957745 Score = 138 bits (152), Expect = 3e-27 Identities = 562/880 (64%), Gaps = 13/880 (1%) Strand=Plus/Plus Query 349271 GCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACTGAGCGT 349330 || || || || |||||| |||| || || || ||||| || || | ||| |||||||| Sbjct 1283405 GCCAACGACCAGGGTAACCGAACGACCCCTTCCTACGTCGCCTTCAACGACTCTGAGCGT 1283464 Query 349331 ATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTTTTTGAT 349390 | || || ||| | || || || || | || || || | || ||||| || || Sbjct 1283465 CTCATCGGCGATGCCGCCAAGAACCAGGTCGCCATGAACCCGTACAACACGGTGTTCGAC 1283524 Query 349391 GCTAAGCGACTTATTGGTAGAAGTTTTTCTGAC----AAATCTACACAATCTGATCTAAA 349446 || ||||| || ||||| | | ||| | ||| | || || || || | || Sbjct 1283525 GCCAAGCGTCTCATTGGCCGCAAGTTTGCCGACGCCGAGGTC----CAGTCCGACATGAA 1283580 Query 349447 ACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTTGAATA 349506 || | || || | || | | | ||| || | || || | || ||||| || || Sbjct 1283581 GCACTGGCCCTTCAAGGTCAT-CGACAAG--GGCGGCAAGCCCGTGATCGAGGTCGAGTA 1283637 Query 349507 TAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTTAAAAT 349566 ||| || || || || ||||| || || || || ||||| | | || || Sbjct 1283638 CCGAGGGGAGACCAAGCAGTTCACTCCCGAGGAGATCTCGTCCATGGTCCTCCTCAAGAT 1283697 Query 349567 GAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACC 349626 |||||| | || || || || | |||| || || || | || || | || || || Sbjct 1283698 GAAGGAGACCGCCGAGGCCTACCTCGGTGGCACCGTCACCAAGGCCGTCGTCACCGTCCC 1283757 Query 349627 AGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTT 349686 ||||| || || || | |||||| || || || || || || ||| |||| | Sbjct 1283758 TGCCTACTTCAACGACTCGCAGCGTCAGGCCACCAAGGACGCCGGTGTCATCTCGGGTCT 1283817 Query 349687 AAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAA 349746 | || || | || || || || ||||| || || || || || || || || || || Sbjct 1283818 CGACGTCCTCCGTATCATCAACGAGCCCACCGCCGCCGCCATCGCCTACGGTCTCGACAA 1283877 Query 349747 AATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGT 349806 | | | | | || || || |||| || || || | ||||||||||| || ||||| Sbjct 1283878 GAAGGGCGCCGGCGAGAAGAACGTTCTCATCTTCGACCTCGGTGGTGGTACGTTCGATGT 1283937 Query 349807 ATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACA 349866 || || || || |||| ||||| || || || || || || || || ||||| || || Sbjct 1283938 CTCGCTCCTCACCATTGAGGAGGGCATCTTCGAGGTCAAGGCCACCGCCGGTGACACCCA 1283997 Query 349867 TCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCG 349926 ||| ||||| || || ||||| || |||||||| || ||||| | || || ||||| Sbjct 1283998 TCTCGGTGGTGAGGACTTTGACAACCGTCTCGTCAACCACTTTGTCCAGGAGTTCAAGCG 1284057 Query 349927 TCAAG-CTAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGT 349985 |||| || | || | || | | || | ||||| || |||| || | Sbjct 1284058 -CAAGAACAAGAAGGACCTCTCTTCCAACGCCCGCGCTCTCCGTCGTCTCCGAACCGCCT 1284116 Query 349986 GTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAATTGATTCTC 350045 |||| ||||| ||||| || | || || | |||| ||||| || || || || || | Sbjct 1284117 GTGAGCGTGCCAAGCGAACCCTCTCTTCCGCCGCCCAGACCTCGATCGAGATCGACTCGC 1284176 Query 350046 TTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGAATTATGTA 350105 | || |||| || |||| | || || || ||||| || || || || | || Sbjct 1284177 TCTTCGACGGCATCGACTTCTACACCTCGATCACCCGTGCCCGATTCGAGGAGCTCTGCC 1284236 Query 350106 TGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGT 350145 ||| || || | | || ||||| || || || || || Sbjct 1284237 AGGACCTCTTCCGCTCCACCATGGAGCCCGTCGAGAAGGT 1284276 >seq18 Length=823183 Score = 125 bits (138), Expect = 2e-23 Identities = 167/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | || || || || || || || ||||||||||| || || || || Sbjct 46749 CATACCACCACGGAGTCGGAGGACGAGGTGGAGGGTGGACTCTTTTTGGATGTTGTAGTC 46808 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| || ||||| || || || || || || || |||||||| || || || Sbjct 46809 GGAGAGGGTTCGGCCGTCTTCCAGCTGCTTGCCGGCGAAAATGAGACGTTGTTGGTCTGG 46868 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || || || ||||| || |||| || || | || Sbjct 46869 CGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACATTGTCGATCGTGTCGGACGACTC 46928 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || || || || | ||||| || || || || || || || ||||||||| Sbjct 46929 GACCTCGAGCGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATT 46980 Score = 114 bits (126), Expect = 4e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| ||||| || | | ||||| || || || || ||||| || || || || || || Sbjct 46977 CATTCCACCGCGGAGACGAAGAACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTC 47036 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||| || || || || || || || || || |||||||| || || Sbjct 47037 GGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATCAGGCGTTGCTGGTCCGG 47096 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || || || || ||||| || || || || || || || |||| || || | || Sbjct 47097 AGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGACGACTC 47156 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || || | ||||| ||||| || || || || ||||||||||| Sbjct 47157 AACCTCGAGAGTGATGGTCTTGCCGGTCAGAGTCTTGACGAAAATCTGCAT 47207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515253332219165