Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20sp._20JCM_2024511_20[genbank_20GCA_5F001600855.1_2020 16-03-01] 55 sequences; 28,180,937 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq14 533 2e-146 seq18 131 2e-25 seq1 89.7 6e-13 >seq14 Length=977059 Score = 533 bits (590), Expect = 2e-146 Identities = 1107/1636 (68%), Gaps = 53/1636 (3%) Strand=Plus/Minus Query 78300 CTGGTCGATGTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTC 78359 ||||||||| | ||||| ||||| || || | ||| ||||||| |||||| | |||||| Sbjct 769445 CTGGTCGATAAAGGCACCACGGTCCGCGGCGAGGTCAATGACCGCCTTTTGGGAAATCTC 769386 Query 78360 CCAGATGGTCCGGTAAATGGCCTTCAGCTCTTCCTGGATGTCCAG--CGCT-TGTA-CGC 78415 ||||| ||| ||| || ||||| |||||| | ||||| | | || | || | || Sbjct 769385 CCAGACCGTCTTGTAGATCGCCTTGAGCTCTGCGGGGATGCTCGGAACGTTCTGGATCGA 769326 Query 78416 TCCCACCGGCTCGCACAATTTCATTCTTAATTTGAGGGTTCCAGCGATTGATCTTCTGAA 78475 || ||| || | || ||||| || | || |||| || || || | Sbjct 769325 GCCGCCCGCGGCG-ATGATGAGGTTCTTCATGTTCTCGTCCCAGAGACCGAGGTTGATGA 769267 Query 78476 GATCCCGGA----CCAGGTGCCGGTTAATCATGAC---GAACTCGCCGGCCAGGGTCCGG 78528 |||| |||| ||||| || || | ||| ||| || || | || ||| Sbjct 769266 GATCGCGGAGCAACCAGGGGC-----AAAC--GACCTGGAAGTCACCAGAGAGCACACGG 769214 Query 78529 CGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCG 78588 || ||| | | | ||||| |||||||| |||||| ||| | |||||| | | Sbjct 769213 CGGGCGTACAGCATCGAGGTGTAGGGCTCGAAGCACTCGTTCCACCCGAGGATCTGCGAG 769154 Query 78589 GTCGAGGCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGAT- 78647 ||||||||||| ||||| || ||||| || || || || || | ||| ||| |||||| Sbjct 769153 GTCGAGGCGGTGGGCATCGGCGCGACGAGGAGCGAGTTGCGGACACCGTGCTGCTTGATG 769094 Query 78648 --CTCGACCTTTAGG----CCGTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGG 78701 |||| | ||| | |||||| | || ||| || ||||||| ||| || Sbjct 769093 TTCTCG-CGGAGAGGAGCCCAGTCCCAGAGGTCGGTCGGGACGCGGCCCCACAGGTCGGG 769035 Query 78702 TTGAAGGATACCCTCGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTT 78761 || |||| ||||| ||| ||||| |||| | | |||||||| || ||||| Sbjct 769034 CTGGAGGAGACCCTTGGAGATGGGCGAGCCCTCGTAGGTCTCGTACTTGCCAAACTCCTG 768975 Query 78762 GGCGAGTTCGCATGACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTT 78821 |||||| ||||| ||| | || || |||||||| | | ||||||||| |||| Sbjct 768974 GGCGAGCTCGCACGACGCCTCGAGAGCGGCGTGGTAGATCGTCTCGAAGATCTGGATGTT 768915 Query 78822 GAGCTCGCGCGCCTTGGTCTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAG 78881 ||||||||| || || | |||||||| | || || ||| ||| ||||||| || Sbjct 768914 GAGCTCGCGGGCGGCGGGCGAGTCGAACGGCATGCGCAGAGCCATAAAGGCATCGGCGAG 768855 Query 78882 GCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGGT 78941 |||||||| |||| ||| || ||||| |||||||| || |||||| ||| | Sbjct 768854 ACCCTGGACACCGAGGCCGACAGGGCGGTGACGCATGTTCGAGTTGCGGGCCTCCTTGAC 768795 Query 78942 CGGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCACCTC 79001 ||||| |||| || |||||| || ||||| ||||||||| || | ||| Sbjct 768794 AGGGTAGTAGTTGCGGGTGATGACCGTGTCGAGGTTCTTGGTGACGACCTTTGTGATCTC 768735 Query 79002 GTACAATTTGGCGAAATCAAAA----TGATTTCCTTT--GATGAAAGTCGGTAGGCACAG 79055 || | || ||| || | || ||| | || || | || ||| || Sbjct 768734 GTGGAGCTTCTTGAAGTCGTAGACCCTGCGCTCCATGTCGACAAACGCGGGGAGGGCGAG 768675 Query 79056 CGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCA 79115 ||| || |||||||| ||||| |||||| ||| ||| ||||||||| || ||||| Sbjct 768674 CGAGGCGAGGTTGCAGACGGCGACCTCGTCGGGGGCAGAGTACTCGATGATCTCGGTGCA 768615 Query 79116 CAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTC 79175 | || ||||||||||||||||||| || || ||||||| ||| |||| |||||| Sbjct 768614 GAGGTTGGACGACTTGATGGTGCCGAGGTGCTGCTGGTTGGACTTTGCGTTGGCGGCGTC 768555 Query 79176 CTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGAT 79235 ||||||| |||| | || |||||||| ||| || ||| | | | ||||| Sbjct 768554 CTTGTAGAGCATGAAGGGGCCACCGGTCTCGGTCTGGGCCTCGAGGATGGCAAACCAGAG 768495 Query 79236 GTCCCGGGCCCGGACAACCTTCTTGTACCGACCCTGTGCGAC------GTACGTCCGGTA 79289 | | | ||| || | ||||| ||||||| || | ||| || ||| Sbjct 768494 CTTCTGCGCCTTGAT---CGTCTTG---CGACCCTTGCCGGCCTGCTCGTAGCTCTCGTA 768441 Query 79290 CAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACAT 79349 | || | || || || | || |||| ||||| ||||||||| |||||||| Sbjct 768440 GAGCTTCTCAAACTGGTCGCCGTGCACGTCGGCGAGGCCGGGGCACTCGGCGGGGCACAT 768381 Query 79350 CAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGC 79409 || |||||| |||| ||| || || |||||||||||||| |||||| ||||| Sbjct 768380 GAGCGTCCAGTCGCCGTCGGCCTCGACGCGCTTCATGAAGAGGTCCGAGATCCAGAGGGC 768321 Query 79410 CGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAA 79469 ||| ||||| ||| || | ||||| | ||| |||||| | || ||||| || Sbjct 768320 GTAGAACAGGTCACGGGCGCGGACTTCCTCCTTGCCGTGGTTCTTCCTGAGGTCGAGGAA 768261 Query 79470 GTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCC 79529 ||| | ||||||||||||||| ||||| || ||||| || || | ||| |||||| Sbjct 768260 GTCGAAGATGTCGGCGTGCCAAGGCTCGAGGTAGATCGCAAAGGCACCGGGACGCTTGTT 768201 Query 79530 GCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCC 79589 ||| ||||||| |||||| ||||| ||| || | | | |||||||| || ||||| || Sbjct 768200 GCCACCCTGGTCGACGTAGCGGGCAGTGGCGTCGTACGCGCGGAGCATCGGGACGATACC 768141 Query 79590 GTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCAGTG 79649 || | | ||||| || ||| ||| | || | || || ||||| | ||| Sbjct 768140 GTTCGAGTAACCGTTGGTACCGGCGATGTAGGAGCCCTTGGCGCGGATGTTGTGGATGTG 768081 Query 79650 GATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGAT 79709 | ||||| || |||| ||| ||||| || |||||| |||||||||||||||||| Sbjct 768080 AAGACCGATACCACCGGCGGTCTTTGAGATCTGAGCGCACGTCTTGAGCGTCTCGTAGAT 768021 Query 79710 GCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTT 79769 || || |||||||||||| |||| ||||| |||||||| ||||||||| |||||| Sbjct 768020 CCCGTCAATCGAGTCGTCCCTCATGGCGACGAGGAAGCACGACGACATCTGGGGGTTGGG 767961 Query 79770 CGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCT----CATCA 79825 ||| |||||||||||||| || |||| ||||| |||||| | | ||| ||| | Sbjct 767960 CGTGCCGGCGTTGAAGAGCGTGGGCGAGGCGTGAGTGAAG----TATCGCTCCGACATGA 767905 Query 79826 GATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCA 79885 | | ||||||||| |||| || || | |||||||| ||||| ||||| |||| Sbjct 767904 GGTTGTACGTCTCGATGACCTTGTCGATGTTGGATCCGTGGATACCGACGGCGACACGCA 767845 Query 79886 TGAAGAGGTACTGGGG 79901 ||| | || |||||| Sbjct 767844 TGATCATGTGCTGGGG 767829 Score = 499 bits (552), Expect = 3e-136 Identities = 947/1380 (69%), Gaps = 38/1380 (3%) Strand=Plus/Plus Query 19103 CCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTC 19162 || ||| || | ||||||| ||||| ||||| ||||| || | || || ||| Sbjct 767829 CCCCAGCACATGATCATGCGTGTCGCCGTCGGTATCCACGGATCCAACATCGACAAGGTC 767888 Query 19163 CGCGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTC 19222 |||||| ||| |||| ||| || | |||||| ||||| |||| || || ||| Sbjct 767889 ATCGAGACGTACAACCTCATGTCGGAGCGATACTTCACTCACGCCTCGCCCACGCTCTTC 767948 Query 19223 AACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGAC 19282 |||||||| ||| |||||| ||||||||| || ||||| || || |||| ||| ||| Sbjct 767949 AACGCCGGCACGCCCAACCCCCAGATGTCGTCGTGCTTCCTCGTCGCCATGAGGGACGAC 768008 Query 19283 AGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGG 19342 ||||| || |||||||||||||||||| |||||| || ||||| ||| |||| Sbjct 768009 TCGATTGACGGGATCTACGAGACGCTCAAGACGTGCGCTCAGATCTCAAAGACCGCCGGT 768068 Query 19343 GGTATCGGGATCCACTGCTCGAATATCCG-GTCGAGTGGTAC-ACGAATCAATGGGACGA 19400 |||||||| | ||| | || ||||| | | || | | | || ||| || || | Sbjct 768069 GGTATCGGTCTTCACATCCACAACATCCGCGCCAAGGGCTCCTAC--ATCGCCGGTACCA 768126 Query 19401 ACGGAGTAGCCGA-CGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTAC 19459 |||| || ||| |||||||||||| |||||||||| | | || ||| ||| | ||| Sbjct 768127 ACGGT-TACTCGAACGGTATCGTCCCGATGCTCCGCGCGTACGACGCCACTGCCCGCTAC 768185 Query 19460 GTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCAC 19519 ||| ||||||| ||| ||| || || | || || |||||||||||||| |||||| Sbjct 768186 GTCGACCAGGGTGGCAACAAGCGTCCCGGTGCCTTTGCGATCTACCTCGAGCCTTGGCAC 768245 Query 19520 GCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGT 19579 || ||| || | || |||||||| || | |||||| || | ||||| | ||| Sbjct 768246 GCCGACATCTTCGACTTCCTCGACCTCAGGAAGAACCACGGCAAGGAGGAAGTCCGCGCC 768305 Query 19580 CGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGAC 19639 || ||||| ||| ||| | ||||| ||||||| |||||| || || ||| ||| Sbjct 768306 CGTGACCTGTTCTACGCCCTCTGGATCTCGGACCTCTTCATGAAGCGCGTCGAGGCCGAC 768365 Query 19640 GAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAG 19699 | || ||| || |||||||| ||| ||||| ||||| ||||||| ||||||| Sbjct 768366 GGCGACTGGACGCTCATGTGCCCCGCCGAGTGCCCCGGCCTCGCCGACGTGCACGGCGAC 768425 Query 19700 GCGTTCAATGAGTTGTACCGGACTTACGTAGCCCAGGGCCGGTTCAAG------AAGGTG 19753 ||| | || | ||| || |||| ||| |||||| |||| ||| | Sbjct 768426 CAGTTTGAGAAGCTCTACGAGAGCTACG-AGC---AGGCCGG--CAAGGGTCGCAAGACG 768479 Query 19754 GTCCGGGCCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCG 19813 || ||| | | | ||||| | ||||| | |||| ||||||||| || Sbjct 768480 ATCAAGGCGCAGAAGCTCTGGTTTGCCATCCTCGAGGCCCAGACCGAGACCGGTGGCCCC 768539 Query 19814 TACATGTGCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATC 19873 | |||| ||||||||||||||| ||||| ||||| || ||| || || ||||| | ||| Sbjct 768540 TTCATGCTCTACAAGGACGCCGCCAACGCAAAGTCCAACCAGCAGCACCTCGGCACCATC 768599 Query 19874 AAGTCGTCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTG 19933 |||||||||||||| || || || ||||| ||| || || |||||| ||||| Sbjct 768600 AAGTCGTCCAACCTCTGCACCGAGATCATCGAGTACTCTGCCCCCGACGAGGTCGCCGTC 768659 Query 19934 TGTAATCTGGCGTCCCTGTGCCTGCCGACTTTCGTC------AAGGCCTCCTCCTTCGAC 19987 || || || || || || ||| || | || ||| || | || |||| Sbjct 768660 TGCAACCTCGCCTCGCTCGCCCTCCCCGCGTTTGTCGACATGGAGCGCAGGGTCTACGAC 768719 Query 19988 TTTGCCAAATTGTACGAGGTGACCCGGGTCGTCACGCGTAATCT-GAATCGCGTCATCGA 20046 || || | ||||| | || ||||||||| || || || || |||||| Sbjct 768720 TTCAAGAAGCTCCACGAGATCACAAAGGTCGTCACCAAGAACCTCGACACG-GTCATCAC 768778 Query 20047 TCGGAACTTTTACCCGACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGC 20106 || |||| ||||| | ||| ||| ||||| ||||| ||||| ||||| || ||| Sbjct 768779 CCGCAACTACTACCCTGTCAAGGAGGCCCGCAACTCGAACATGCGTCACCGCCCTGTCGG 768838 Query 20107 GATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGACGATCC 20166 |||| |||||||| || ||||| | || ||| || || | | |||||| || Sbjct 768839 CCTCGGTGTCCAGGGTCTCGCCGATGCCTTTATGGCTCTGCGCATGCCGTTCGACTCGCC 768898 Query 20167 CAAGGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGA 20226 | || ||||||||||||| ||||||||| | | |||||||| || ||| || Sbjct 768899 CGCCGCCCGCGAGCTCAACATCCAGATCTTCGAGACGATCTACCACGCCGCTCTCGAGGC 768958 Query 20227 ATCGTGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGTC 20286 |||||||| |||||| | ||| ||| ||||||||| | | |||| |||||| || Sbjct 768959 GTCGTGCGAGCTCGCCCAGGAGTTTGGCAAGTACGAGACCTACGAGGGCTCGCCCATCTC 769018 Query 20287 CGAGGGTATCCTCCAGCCGGACATGTGGG---GCGTCACTGAGAATGAGTTTTG-----G 20338 | ||||| |||||||||| ||| |||||| ||||| | || || | || | Sbjct 769019 CAAGGGTCTCCTCCAGCCCGACCTGTGGGGCCGCGTCCC---GACCGACCTCTGGGACTG 769075 Query 20339 AGCGCC-CTCAAGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCC 20397 || || ||| | | |||||| ||||| | ||||||||| | ||||||||||| Sbjct 769076 GGCTCCTCTCCGCGAGAACATCAAGCAGCACGGTGTCCGCAACTCGCTCCTCGTCGCGCC 769135 Query 20398 CATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACAC 20457 ||||| |||||||||||| | |||||| | ||| |||||| |||||||| ||||| Sbjct 769136 GATGCCCACCGCCTCGACCTCGCAGATCCTCGGGTGGAACGAGTGCTTCGAGCCCTACAC 769195 >seq18 Length=823183 Score = 131 bits (144), Expect = 2e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 59982 CGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATT 60041 |||||||| || ||||| ||| || || ||||||||||| ||||||||| | || Sbjct 29608 CGTCTCATCGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGTTCGCCTCGATC 29549 Query 60042 TTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCC 60101 ||||||||||| ||||| ||||||||||| ||||| | |||||||||||||| || || Sbjct 29548 TTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCG 29489 Query 60102 CGGGACGAGGGCCTCCA 60118 || |||||||| ||||| Sbjct 29488 CGTGACGAGGGTCTCCA 29472 >seq1 Length=2178591 Score = 89.7 bits (98), Expect = 6e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 59981 ACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTAT 60040 ||| ||| | || || || || || || || ||||| ||||| || |||||| || || Sbjct 1448091 ACGACTCGTCGCCTTCGCTTGTGTCGAGGGGATCTTTTTCTCCGGGTCGTTCGCAGCCAT 1448032 Query 60041 TTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTC 60100 |||||| | || ||||| || |||||||||||| ||| ||||| || ||| |||| Sbjct 1448031 CTTCTGGTTGAAGAAGCGGGGGCTCATGCCGGGCTTGACGTTCTCGAATGAGTTGATCAG 1447972 Query 60101 CCGGGACGAGGG 60112 ||||||||||| Sbjct 1447971 TCGGGACGAGGG 1447960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548524422889200