Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20sp._20JCM_2024511_20[genbank_20GCA_5F001600855.1_2020 16-03-01] 55 sequences; 28,180,937 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq14 315 8e-81 seq6 149 7e-31 seq1 100 3e-16 >seq14 Length=977059 Score = 315 bits (348), Expect = 8e-81 Identities = 543/782 (69%), Gaps = 24/782 (3%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTAC-ACGCGTGTCCGTGAGACGTAC 53251 ||||||| |||||| | ||||||||||| | || | || | ||| ||||||||| Sbjct 767842 TCATGCGTGTCGCCGTCGGTATCCACGGATCCAACATCGACAAG-GTCATCGAGACGTAC 767900 Query 53252 GACTTAATG----AGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGG 53307 || | ||| ||| | ||||| || |||||| |||| || || |||||||| || Sbjct 767901 AACCTCATGTCGGAGCGA----TACTTCACTCACGCCTCGCCCACGCTCTTCAACGCCGG 767956 Query 53308 TACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGA 53367 ||| |||| ||||||||| |||||||| || || |||| ||| |||||||| || Sbjct 767957 CACGCCCAACCCCCAGATGTCGTCGTGCTTCCTCGTCGCCATGAGGGACGACTCGATTGA 768016 Query 53368 CGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGG 53427 ||| |||||||||||||||||| ||| || || ||||| ||| | ||||||||||| Sbjct 768017 CGGGATCTACGAGACGCTCAAGACGTGCGCTCAGATCTCAAAGACCGCCGGTGGTATCGG 768076 Query 53428 TATCCACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGC 53487 | | ||| | ||| |||| || || ||| | ||| || || ||||| | | Sbjct 768077 TCTTCACATCCACAACATCCGCGCCAAGGGCTCCTACATCGCCGGTACCAACGGTTACTC 768136 Query 53488 CGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGG 53547 | || ||||| || |||||||||| | | || ||| ||||| |||||| ||||||| Sbjct 768137 GAACGGTATCGTCCCGATGCTCCGCGCGTACGACGCCACTGCCCGCTACGTCGACCAGGG 768196 Query 53548 TGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTAT 53607 ||| ||||| || | || || |||||||||||||| |||||||||||||| | Sbjct 768197 TGGCAACAAGCGTCCCGGTGCCTTTGCGATCTACCTCGAGCCTTGGCACGCCGACATCTT 768256 Query 53608 GGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT 53667 || || ||||| || | ||| || || | || || | ||| |||||||||||| Sbjct 768257 CGACTTCCTCGACCTCAGGAAGAACCACGGCAAGGAGGAAGTCCGCGCCCGTGACCTGTT 768316 Query 53668 -TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGT 53726 ||| || || ||||| |||||||||||||| | || ||| |||| || ||| Sbjct 768317 CTAC-GCCCTCTGGATCTCGGACCTCTTCATGAAGCGCGTCGAGGCCGACGGCGACTGGA 768375 Query 53727 ACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACG 53786 || |||||||| |||||||||||||||| | || |||| || ||||| | Sbjct 768376 CGCTCATGTGCCCCGCCGAGTGCCCCGGCCTCGCCGACGTGCACGGCGACCAGTTTGAGA 768435 Query 53787 AGATGTATCGGACGTAC--GCAGTTC----AGGGCCGCTACAAGAAGAAGGTCAAGGCGC 53840 || | || || ||| |||| | |||| ||| |||| | ||||||||| Sbjct 768436 AGCTCTACGAGAGCTACGAGCAGGCCGGCAAGGGTCGC------AAGACGATCAAGGCGC 768489 Query 53841 GTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCT 53900 || | ||| ||| |||||| || |||| ||||| || || | |||| || Sbjct 768490 AGAAGCTCTGGTTTGCCATCCTCGAGGCCCAGACCGAGACCGGTGGCCCCTTCATGCTCT 768549 Query 53901 ACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCA 53960 ||||||| | | ||||| ||| ||||||| || || ||||| |||||| ||| || Sbjct 768550 ACAAGGACGCCGCCAACGCAAAGTCCAACCAGCAGCACCTCGGCACCATCAAGTCGTCCA 768609 Query 53961 AC 53962 || Sbjct 768610 AC 768611 >seq6 Length=1469472 Score = 149 bits (164), Expect = 7e-31 Identities = 348/521 (67%), Gaps = 33/521 (6%) Strand=Plus/Minus Query 158980 ACAAAGTCCTCTGGACCGGGCTGTTGGAGCATGAGCCACATGGCCTCGACGTAATCCTGC 159039 |||||||||||||| || ||||||||| |||||||| |||||||||| ||| | Sbjct 1092145 ACAAAGTCCTCTGGGTTCTCTTGCTGGAGCATGCGCCACATGCCCTCGACGTAGTCCCGG 1092086 Query 159040 GCGTGACCCCAGTCGCGCTTGGCATCCATGTTCCCGAGCTCGATGACTTTTCCAGACTTT 159099 ||||| |||||||| |||||||| || ||||| || | | | | ||| ||| Sbjct 1092085 GCGTGTCCCCAGTCTCGCTTGGCGTCAATGTTGCCCATGTACAGG-------CAGTCTTG 1092033 Query 159100 TT--CC--------ACTCAGCCAGACCGAGCGTGATCTTGCGCGTCACAAACTCTGCTCC 159149 || || ||| || | || | ||||||||||| || ||||| | ||| Sbjct 1092032 TTGGCCGCAGCTGATCTCGGCGACGGCGCGGGTGATCTTGCGGGTGACAAAGGTTCGTCC 1091973 Query 159150 GCGCCGTTCCGACTCATGGTTAAACAGAATGCCGGTACAAGCGAACAGGTTATAGGACTC 159209 || || |||||| ||||| || || | |||| | || ||||||| ||| || | ||| Sbjct 1091972 TCGTCGGGGCGACTCGTGGTTGAAGAGCACGCCGTTGCAGGCGAACATGTTGTACGCCTC 1091913 Query 159210 GCGGTAATTTTTAGTTATCCAGTATCCAAAGAGCTTGGAGACGCCGTATGGACTCCGAGG 159269 ||||| || ||||| | | ||||||||| ||||||||| || || || Sbjct 1091912 TCGGTAGTTGACGACGCTCCAGAACGCGTAGAGCTTGGCGACGCCGTAGGGCGATCGGGG 1091853 Query 159270 ATAAAATGGTGTCCCCTCATTTT--GAATTGGTTCCTGAACCTTTCCAAACATTTCACTC 159327 || || || || |||| || | | |||| | | ||||| || | | || | Sbjct 1091852 ATGGAAGGGCGTGTCCTCGTTCTGGGGGATGGTGC--GGACCTTGCCGTAGAGCTCGGAC 1091795 Query 159328 GTCCCAGCCTGATAAAATTTGA-----ATTTAGAAACAAAATTGAATTGACGAATTGCTT 159382 ||| ||||| || || |||| ||| || || | | || || || | Sbjct 1091794 GTCGAGGCCTGGTAGAACTTGACGAGCTTTTCGAGAC-----CGCAGGTGCGGATGGCGT 1091740 Query 159383 CAAGAATTCGAAGGGTACCCATGGCGTCGACGTTCGCC-GTGTACTCGGGCTGCTCAAAA 159441 | || | || || || || |||||||||||| ||||| |||||||||| | ||| || Sbjct 1091739 CGAGGAGACGGAGCGTGCCAATGGCGTCGACG-TCGCCGGTGTACTCGGACATCTCGAAC 1091681 Query 159442 GAGAGCTTCACGTGTGACTGGGCTCCGAGGTTATAGACCTC 159482 |||| ||| ||||| |||||||| ||||||| |||| ||| Sbjct 1091680 GAGACCTTGACGTGGGACTGGGCGGCGAGGTTGTAGATCTC 1091640 >seq1 Length=2178591 Score = 100 bits (110), Expect = 3e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 74763 TGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCA 74822 |||| || || || | || ||||| |||||||| |||| | ||| ||||| || || Sbjct 1447954 TGCGTCCCCTCGTCCCGACTGATCAACTCATTCGAGAACGTCAAGCCCGGCATGAGCCCC 1448013 Query 74823 CGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACAC 74882 |||||||||||||| |||||||| ||| || || ||| ||||| || |||||||| Sbjct 1448014 CGCTTCTTCAACCAGAAGATGGCTGCGAACGACCCGGAGAAAAAGATCCCCTCGACACAA 1448073 Query 74883 GCAAAGGCGACAAGGCGT 74900 || |||||||| || ||| Sbjct 1448074 GCGAAGGCGACGAGTCGT 1448091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215623789000