Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20sp._20JCM_2024511_20[genbank_20GCA_5F001600855.1_2020 16-03-01] 55 sequences; 28,180,937 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq14 385 5e-102 seq18 168 8e-37 seq5 129 7e-25 seq3 109 6e-19 seq1 86.0 7e-12 seq29 82.4 9e-11 >seq14 Length=977059 Score = 385 bits (426), Expect = 5e-102 Identities = 918/1376 (67%), Gaps = 30/1376 (2%) Strand=Plus/Minus Query 80395 GTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATC 80454 ||||| ||||| || |||||| ||||||||||| | || || || |||||| Sbjct 769195 GTGTAGGGCTCGAAGCACTCGTTCCACCCGAGGATCTGCGAGGTCGAGGCGGTGGGCATC 769136 Query 80455 GGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTCGCGCAAATCTGAC 80514 || |||| | || || || || | ||||||| |||||| | |||||| | | | | Sbjct 769135 GGCGCGACGAGGAGCGAGTTGCGGACACCGTGCTGCTTGATGTTCTCGCGGAGAGGAGCC 769076 Query 80515 CAA------AAATCAACCCCAACGCTGTGACCCCACATGTCGTGCTGCAAGATGCCCTCC 80568 || | || | |||| | ||||||| |||| |||| | || |||| Sbjct 769075 CAGTCCCAGAGGTCGGTCGGGACGCGG---CCCCACAGGTCGGGCTGGAGGAGACCCTTG 769019 Query 80569 GACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACACGAC 80628 || || || ||| || | ||||||||| ||| | || ||| ||||| |||||| Sbjct 769018 GAGATGGGCGAGCCCTCGTAGGTCTCGTACTTGCCAAACTCCTGGGCGAGCTCGCACGAC 768959 Query 80629 TCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGT 80688 || || || ||||| || || ||| |||| |||| | |||| || Sbjct 768958 GCCTCGAGAGCGGCGTGGTAGATCGTCTCGAAGATCTGGATGTTGAGCTCGCGGGCGGCG 768899 Query 80689 GGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATG 80748 || |||||||| || || || ||| || | || || || ||||| || |||| | Sbjct 768898 GGCGAGTCGAACGGCATGCGCAGAGCCATAAAGGCATCGGCGAGACCCTGGACACCGAGG 768839 Query 80749 GCGATCGGGCGGTGGCGCTTGTTCGA-TCGCTCGGCCTCCGGAATTGGGTAAAAGTTATT 80807 ||| |||||||| ||| ||||||| | || ||||||| | ||||| |||| Sbjct 768838 CCGACAGGGCGGTGACGCATGTTCGAGTTGCG-GGCCTCCTTGACAGGGTAGTAGTTGCG 768780 Query 80808 ATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAA 80867 |||||| || ||||| || || ||| ||| | || || || |||| || Sbjct 768779 GGTGATGACCGTGTCGAGGTTCTTGGTGACGACCTTTGTGATCTCGTGGAGCTTCTTGAA 768720 Query 80868 GTCGAAT----TG-GTTCCCCTTC-ACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCA 80921 |||| | || | ||| || ||||| || || ||| || || || || ||||| Sbjct 768719 GTCGTAGACCCTGCGCTCCATGTCGACAAACGCGGGGAGGGCGAGCGAGGCGAGGTTGCA 768660 Query 80922 CACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTT 80981 ||||| ||||| || | | | |||||| ||| || ||||| | || || ||||| Sbjct 768659 GACGGCGACCTCGTCGGGGGCAGAGTACTCGATGATCTCGGTGCAGAGGTTGGACGACTT 768600 Query 80982 AATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTA 81041 || || || |||| | |||||| ||||| |||||| |||||||||||| |||| | Sbjct 768599 GATGGTGCCGAGGTGCTGCTGGTTGGACTTTGCGTTGGCGGCGTCCTTGTAGAGCATGAA 768540 Query 81042 CGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGAC 81101 ||| |||||||||| ||| | || ||||||||| ||| | || ||||||||| Sbjct 768539 GGGGCCACCGGTCTCGGTCTGGGCCTCGAGGATGGCAAACCAGAGCTTCTGCGCCTTGAT 768480 Query 81102 CACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTA-AGCTTCGTCGAACTTGGCAC 81160 | |||||| ||||| | | | || | |||| |||||| || |||| | | | Sbjct 768479 CGTCTTGCGACCCTTGCCGGCCTGCTCGTAGCTCTCGTAGAGCTTC-TCAAACTGGTCGC 768421 Query 81161 CGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGT 81220 |||| | || | |||| | ||||||||| |||||||| || ||||||| |||| Sbjct 768420 CGTGCACGTCGGCGAGGCCGGGGCACTCGGCGGGGCACATGAGCGTCCAGTCGCCGTCGG 768361 Query 81221 TCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGC 81280 ||| || ||||||||| ||| | ||||||||||||| ||||||||| ||| || Sbjct 768360 CCTCGACGCGCTTCATGAAGAGGTCCGAGATCCAGAGGGCGTAGAACAGGTCACGGGCGC 768301 Query 81281 GCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCC 81340 | | ||||| | || ||||| | | ||||| ||||| | |||||| || |||| Sbjct 768300 GGACTTCCTCCTTGCCGTGGTTCTTCCTGAGGTCGAGGAAGTCGAAGATGTCGGCGTGCC 768241 Query 81341 ATGGCTCCAGATACACGGCGATCGACCCCTTGCGACG------GCCACCCTGGTTGACGT 81394 | ||||| || || | || | | || | |||| ||||||||||| ||||| Sbjct 768240 AAGGCTCGAGGTAGATCGCAAAGGCACC---GGGACGCTTGTTGCCACCCTGGTCGACGT 768184 Query 81395 AACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGACTGACCGTTCG 81454 | |||||||| |||| | | || | ||| |||| |||||| | || | |||||| | Sbjct 768183 AGCGGGCAGTGGCGTCGTACGCGCGGAGCATCGGGACGATACCGTTCGAGTAACCGTTGG 768124 Query 81455 TACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTGAAAGACCGATGCCACCTG 81514 |||| |||| || ||||||||||| | ||| ||| ||||||||| ||||| | Sbjct 768123 TACCGGCGATGTAGGAGCCCTTGGCGCGGATGTTGTGGATGTGAAGACCGATACCACCGG 768064 Query 81515 ACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTT 81574 |||||| |||||||| ||| || | ||||| || || || || || || | Sbjct 768063 CGGTCTTTGAGATCTGAGCGCACGTCTTGAGCGTCTCGTAGATCCCGTCAATCGAGTCGT 768004 Query 81575 TTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACA 81634 ||||| | | | ||| || |||||||| ||| | | |||||| ||||| | Sbjct 768003 CCCTCATGGCGACGAGGAAGCACGACGACATCTGGGGGTTGGGCGTGCCGGCGTTGAAGA 767944 Query 81635 GTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGC 81694 | || || | |||||| |||| || || | ||||| |||| || || || |||| | Sbjct 767943 GCGTGGGCGAGGCGTGAGTGAAGTATCGCTCCGACATGAGGTTGTACGTCTCGATGAC-C 767885 Query 81695 GTG-GAATATCGTCACCGTGAATACCGATAGCTACACGCATAAACATGTACTGGGG 81749 || || | | ||||| ||||||| || |||||||| | ||||| |||||| Sbjct 767884 TTGTCGATGTTGGATCCGTGGATACCGACGGCGACACGCATGATCATGTGCTGGGG 767829 >seq18 Length=823183 Score = 168 bits (186), Expect = 8e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || ||||||||||| || ||||| ||||||||||| Sbjct 47207 ATGCAGATTTTCGTCAAGACTCTGACCGGCAAGACCATCACTCTCGAGGTTGAGTCGTCG 47148 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||||| || || |||||||||||||| || ||||| |||||| Sbjct 47147 GACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCGGACCAG 47088 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || || ||||| || || ||||| |||||||||| || ||||| | ||||| || Sbjct 47087 CAACGCCTGATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAAC 47028 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| ||||| || || || || || || | ||||| ||||||||| Sbjct 47027 ATCCAGAAGGAGTCGACCCTCCACCTCGTTCTTCGTCTCCGCGGTGGA 46980 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| |||||||| || || |||||||| || || || ||||| ||||| Sbjct 46980 AATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACGCTCGAGGTCGAGTCGTC 46921 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | ||| | ||||| || || |||||||||||||| || || |||||||| Sbjct 46920 CGACACGATCGACAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCAGACCA 46861 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || ||||| ||||| || || ||||| || || || | || ||||| | ||||| || Sbjct 46860 ACAACGTCTCATTTTCGCCGGCAAGCAGCTGGAAGACGGCCGAACCCTCTCCGACTACAA 46801 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||| || ||||| || || || ||| | || || || ||||| Sbjct 46800 CATCCAAAAAGAGTCCACCCTCCACCTCGTCCTCCGACTCCGTGGTGG 46753 Score = 141 bits (156), Expect = 1e-28 Identities = 161/212 (76%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 27426 GCTT-ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGA 27484 |||| ||||||||||| || || || ||||| ||||| ||| | ||||| ||| | | Sbjct 46114 GCTTGACCGGCAAGACGATCACCCTCGAGGTCGAGTCTTCTGACACCATTGACAATGTCA 46055 Query 27485 AGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTG 27544 |||| || || |||||||||||||| || || || ||||| |||||||| || || || | Sbjct 46054 AGGCGAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAACAGCGTCTGATCTTCGCGG 45995 Query 27545 GTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACT 27603 | ||||| |||||||| | | ||||| ||| ||||| || |||| ||||| || || Sbjct 45994 GCAAGCAGCTCGAGGACGGAAGGACCCTGAGC-GACTACAACATCCAGAAGGAGTCGACG 45936 Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 || || || ||| | ||||| || ||||| || Sbjct 45935 CTGCACCTCGTCCTCCGTCTGCGTGGTGGTCA 45904 Score = 140 bits (154), Expect = 4e-28 Identities = 157/209 (75%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 27426 GCTT-ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGA 27484 |||| || || ||||| ||||| || ||||| ||||| ||| | ||| | || | | Sbjct 46396 GCTTGACGGGAAAGACCATTACCCTCGAGGTCGAGTCGTCTGACACCATCGACAACGTCA 46337 Query 27485 AGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTG 27544 |||| || || |||||||||||||| || || || |||||||||||||| || || || | Sbjct 46336 AGGCGAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAGCGTCTCATCTTCGCCG 46277 Query 27545 GTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTC 27604 | ||||| ||||| || | ||||||||| | ||||| || |||| ||||| || || | Sbjct 46276 GCAAGCAGCTCGAAGACGGTCGTACCCTTTCGGACTACAACATCCAGAAGGAGTCGACGC 46217 Query 27605 TTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| || || | || || || |||||| Sbjct 46216 TTCACCTTGTTCTCCGACTGCGTGGTGGA 46188 Score = 104 bits (114), Expect = 3e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 || ||||| ||||| || || || || || ||||| || | ||| | || | ||| Sbjct 47473 CTCACCGGAAAGACCATCACCCTCGAAGTCGAGTCTTCGGACACCATCGACAACGTCAAG 47414 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || || || |||||||||||||| || ||||| |||||||||||||| || || || || Sbjct 47413 GCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAGCAGCGTCTGATCTTCGCCGGC 47354 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581 ||||| |||||||| | || ||||| | ||||| Sbjct 47353 AAGCAGCTCGAGGACGGCCGCACCCTTTCTGACTA 47319 Score = 95.1 bits (104), Expect = 1e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 27501 CAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGA 27560 || |||||| ||||| |||||||||||||| || || ||||| || ||||| |||||||| Sbjct 46605 CAGGGAGGGCATTCCGCCAGACCAGCAGCGCCTTATCTTTGCCGGCAAGCAGCTCGAGGA 46546 Query 27561 TGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCG 27620 | ||| ||| | | ||||| || |||| ||||| || || || || || || | || Sbjct 46545 CGGTCGCACCTTGTCGGACTACAACATCCAGAAGGAGTCGACGCTCCACCTCGTTCTCCG 46486 Query 27621 TCTTCGCGGTGG 27632 || || ||||| Sbjct 46485 ACTGCGTGGTGG 46474 >seq5 Length=1498571 Score = 129 bits (142), Expect = 7e-25 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 ||||| |||||||| || || || ||||| ||||| || | ||| | ||| | ||| Sbjct 692242 CTTACGGGCAAGACGATCACCCTCGAGGTGGAGTCTTCCGACACCATCGACAATGTCAAG 692183 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || || || |||||||||||||| || || || ||||| ||||| || || || || || Sbjct 692182 GCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAACAGCGCCTGATCTTCGCGGGC 692123 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606 ||||| |||||||| | || ||||| | ||||| || |||| ||||| || || || Sbjct 692122 AAGCAGCTCGAGGACGGCCGAACCCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTC 692063 Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || || | ||||| || ||||| Sbjct 692062 CACCTCGTGCTCCGTCTGCGTGGTGG 692037 >seq3 Length=1717572 Score = 109 bits (120), Expect = 6e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 || ||||| ||||| || || || ||||| ||||| || | ||| | || | ||| Sbjct 192776 CTCACCGGGAAGACCATCACCCTCGAGGTGGAGTCCTCGGACACCATCGACAACGTCAAG 192717 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || || || |||||||||||||| || || || ||||| |||||||| ||||| || || Sbjct 192716 GCGAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAACAGCGTCTCATTTTCGCCGGC 192657 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581 ||||| |||||||| | |||||||| | ||||| Sbjct 192656 AAGCAGCTCGAGGACGGCCGTACCCTTTCGGACTA 192622 >seq1 Length=2178591 Score = 86.0 bits (94), Expect = 7e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 64717 CGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATT 64776 || |||| || || || ||||| || || || || || || ||||| ||| | || Sbjct 1448090 CGACTCGTCGCCTTCGCTTGTGTCGAGGGGATCTTTTTCTCCGGGTCGTTCGCAGCCATC 1448031 Query 64777 TTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCT 64836 |||||| | || |||||||| || ||||| || || |||| ||||| ||| ||||| | Sbjct 1448030 TTCTGGTTGAAGAAGCGGGGGCTCATGCCGGGCTTGACGTTCTCGAATGAGTTGATCAGT 1447971 Query 64837 CGGGACGAGGGG 64848 |||||||||||| Sbjct 1447970 CGGGACGAGGGG 1447959 >seq29 Length=104528 Score = 82.4 bits (90), Expect = 9e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 24991 TGGGAAACCTAGATGCCAAACGTGATTGGGGGCATGCAGCCGACTACGTCGACGCCATGT 25050 |||| ||| |||| || |||||||||||||| || || ||||| ||||| | ||||| Sbjct 16488 TGGGCAACATAGACGCGAAACGTGATTGGGGTCACGCTCGTGACTATGTCGAGGGCATGT 16429 Query 25051 GGCGCATGCTCCAACAGAATAAGCCAGAGGATTTTGTG 25088 |||||||||||||| | | |||| ||||| || ||| Sbjct 16428 GGCGCATGCTCCAATTGGACCAGCCCGAGGACTTCGTG 16391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310007911600