Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20sp._20JCM_2024511_20[genbank_20GCA_5F001600855.1_2020 16-03-01] 55 sequences; 28,180,937 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq18 118 9e-22 seq5 87.8 2e-12 >seq18 Length=823183 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||||||||||||||| | || ||||| || || || |||| Sbjct 47207 ATGCAGATTTTCGTCAAGACTCTGACCGGCAAGACCATCACTCTCGAGGTTGAGTCGTCG 47148 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | ||||| || || || ||||| || || || || || || || Sbjct 47147 GACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCGGACCAG 47088 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || | || | ||||||||| || | || || | ||| | ||||| |||||| Sbjct 47087 CAACGCCTGATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAAC 47028 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||| | || | ||| | ||| | || ||||| || Sbjct 47027 ATCCAGAAGGAGTCGACCCTCCACCTCGTTCTTCGTCTCCGCGGTGGAAT 46978 Score = 100 bits (110), Expect = 2e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 27010 TGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAAC 27069 |||| || ||| | ||||| || || || || |||| ||| | || || | ||||| Sbjct 46393 TGACGGGAAAGACCATTACCCTCGAGGTCGAGTCGTCTGACACCATCGACAACGTCAAGG 46334 Query 27070 AAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCA 27129 || || || ||||| || || || || || || || |||||| | || | |||||||| Sbjct 46333 CGAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAGCGTCTCATCTTCGCCGGCA 46274 Query 27130 AACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTAC 27189 | || | |||||| || ||| |||| || |||||||| || ||||||||||| | | Sbjct 46273 AGCAGCTCGAAGACGGTCGTACCCTTTCGGACTACAACATCCAGAAGGAGTCGACGCTTC 46214 Query 27190 ATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 | | ||| | || |||| ||||| || Sbjct 46213 ACCTTGTTCTCCGACTGCGTGGTGGAAT 46186 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 27010 TGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAAC 27069 ||||||||||| | || || || || || || | || ||| | ||||| | ||||| Sbjct 46111 TGACCGGCAAGACGATCACCCTCGAGGTCGAGTCTTCTGACACCATTGACAATGTCAAGG 46052 Query 27070 AAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCA 27129 || || || ||||| || || || || || || ||||||||| | || | ||| |||| Sbjct 46051 CGAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAACAGCGTCTGATCTTCGCGGGCA 45992 Query 27130 AACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTAC 27189 | || | || ||| | |||| | ||| |||||||| || ||||||||||| | | Sbjct 45991 AGCAGCTCGAGGACGGAAGGACCCTGAGCGACTACAACATCCAGAAGGAGTCGACGCTGC 45932 Query 27190 ATTTGGTTTTGCGTTTGCGGGGTGG 27214 | | || | ||| |||| ||||| Sbjct 45931 ACCTCGTCCTCCGTCTGCGTGGTGG 45907 >seq5 Length=1498571 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 27009 CTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAA 27068 || || |||||| | || || || || ||||| | |||||| | || || | ||||| Sbjct 692242 CTTACGGGCAAGACGATCACCCTCGAGGTGGAGTCTTCCGACACCATCGACAATGTCAAG 692183 Query 27069 CAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGC 27128 || || || ||||| || || || || || || |||||||| | || | ||| ||| Sbjct 692182 GCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAACAGCGCCTGATCTTCGCGGGC 692123 Query 27129 AAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTA 27188 || || | || ||| | ||| | || || |||||||| || |||||||||||| | Sbjct 692122 AAGCAGCTCGAGGACGGCCGAACCCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTC 692063 Query 27189 CATTTGGTTTTGCGTTTGCGGGGTGG 27214 || | || | ||| |||| ||||| Sbjct 692062 CACCTCGTGCTCCGTCTGCGTGGTGG 692037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434918100993600