Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20sp._20JCM_2024511_20[genbank_20GCA_5F001600855.1_2020 16-03-01] 55 sequences; 28,180,937 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq10 104 2e-17 >seq10 Length=1243995 Score = 104 bits (114), Expect = 2e-17 Identities = 231/344 (67%), Gaps = 2/344 (1%) Strand=Plus/Plus Query 6780 CCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGT 6839 ||||||||||||| || | | ||||||| ||||| || || ||| | | | Sbjct 823602 CCTTCGGGTTCCAGGCAGAGAGGACGATCCGCCTGTCGGTCGGATTATTCTTGATCTTAT 823661 Query 6840 CGATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGAT 6899 | ||||| | || ||| ||| |||| | |||| ||| || |||| | | || || Sbjct 823662 CAATCACCTGGGCCAACTGATCCACTCCTTTGCCCGTATAATCATCTTCACACGTCCCAT 823721 Query 6900 ACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCC 6959 | |||||||| || || |||||||||||||| || || || || | ||||| ||| || Sbjct 823722 AATCCGCCCCGAAATGCCTCCACTGGAACCCATACACGGGTCCGAGATCGCCTTCCCTCC 823781 Query 6960 GA-GATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 || || | || ||| || || | || | ||||||| | |||||||| || Sbjct 823782 GATGACCCAACCCGACGC-GATCGAGGTACTCCCTCGACCCGTTGCCTTCCCAGATATTG 823840 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCC 7078 | |||| | || || | ||| || |||| ||| |||||||||||| |||||| Sbjct 823841 ATCCCCTTGTCGGACAGGACTTTGCCGTCCGTGCAGCCCGCCACGAACCACAGGAGCTCC 823900 Query 7079 TCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGG 7122 || ||||| ||| | | | || || || || || |||| ||| Sbjct 823901 TCTACCACTCCCCGCAGGAAGACGCGCTTGGTGGTGAGCAACGG 823944 Score = 104 bits (114), Expect = 2e-17 Identities = 231/344 (67%), Gaps = 2/344 (1%) Strand=Plus/Minus Query 34223 CCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGTTC 34282 ||| |||| || || || || || | | | ||| ||||| |||||||| ||||||||| Sbjct 823944 CCGTTGCTCACCACCAAGCGCGTCTTCCTGCGGGGAGTGGTAGAGGAGCTCCTGTGGTTC 823885 Query 34283 GTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCT 34342 ||| ||| |||| || ||| | || || | |||| | || |||||||| | Sbjct 823884 GTGGCGGGCTGCACGGACGGCAAAGTCCTGTCCGACAAGGGGATCAATATCTGGGAAGGC 823825 Query 34343 CACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATC-TCGGGAGGAGGGCGACTT 34401 ||||||| | || | || || ||| || | || |||| ||| ||||| | Sbjct 823824 AACGGGTCGAGGGAGTACCTCGATC-GCGTCGGGTTGGGTCATCGGAGGGAAGGCGATCT 823766 Query 34402 GGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAAGC 34461 || || || || |||||||||||||| || || |||||||| ||| || | | |||| Sbjct 823765 CGGACCCGTGTATGGGTTCCAGTGGAGGCATTTCGGGGCGGATTATGGGACGTGTGAAGA 823706 Query 34462 GGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGAA 34521 || ||| |||| | |||| ||| ||| || | ||||| || | | ||| || Sbjct 823705 TGATTATACGGGCAAAGGAGTGGATCAGTTGGCCCAGGTGATTGATAAGATCAAGAATAA 823646 Query 34522 CCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGG 34565 || ||||| ||||||| | | || ||||||||||||| Sbjct 823645 TCCGACCGACAGGCGGATCGTCCTCTCTGCCTGGAACCCGAAGG 823602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448262091819600