Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20sp._20JCM_2024511_20[genbank_20GCA_5F001600855.1_2020 16-03-01] 55 sequences; 28,180,937 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq18 196 1e-44 seq5 156 1e-32 seq3 129 1e-24 >seq18 Length=823183 Score = 196 bits (216), Expect = 1e-44 Identities = 177/223 (79%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| |||| ||||| ||||| || |||||||||||||||||||| || || | ||||| Sbjct 46758 ACGGAGTCGGAGGACGAGGTGGAGGGTGGACTCTTTTTGGATGTTGTAGTCGGAGAGGGT 46817 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || ||||||||||||||||| ||||| || || ||||||||||| || || | || Sbjct 46818 TCGGCCGTCTTCCAGCTGCTTGCCGGCGAAAATGAGACGTTGTTGGTCTGGCGGGATGCC 46877 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||||||||| || || || ||||| ||||| || || |||||||| Sbjct 46878 CTCCTTGTCCTGGATCTTCGCCTTGACATTGTCGATCGTGTCGGACGACTCGACCTCGAG 46937 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||||||||| |||||||| ||||| || || | ||||||| Sbjct 46938 CGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATT 46980 Score = 176 bits (194), Expect = 1e-38 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| || || | ||||| | ||||| Sbjct 46996 AGAACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCC 47055 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| ||||| || |||||||| ||||| ||||| | || ||||||||| Sbjct 47056 TCGAGCTGCTTGCCGGCGAAAATCAGGCGTTGCTGGTCCGGAGGGATACCCTCCTTGTCC 47115 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||| ||||| || ||||||||||||||||| ||| Sbjct 47116 TGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGACGACTCAACCTCGAGAGTGATGGTC 47175 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || |||||||| || || | |||||| Sbjct 47176 TTGCCGGTCAGAGTCTTGACGAAAATCTGCAT 47207 Score = 172 bits (190), Expect = 1e-37 Identities = 157/198 (79%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| |||| || ||||||||||| || ||||| || |||||||| || |||| |||||| Sbjct 46194 ACGCAGTCGGAGAACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGT 46253 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || ||||| ||||||||||| |||||||| || || || ||||| || || | || Sbjct 46254 ACGACCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGGATACC 46313 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||||||||| || ||||| |||||||||||||| || |||||||| Sbjct 46314 CTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCAGACGACTCGACCTCGAG 46373 Query 211073 AGTGATCGTCTTTCCCGT 211090 || || ||||||||||| Sbjct 46374 GGTAATGGTCTTTCCCGT 46391 Score = 154 bits (170), Expect = 3e-32 Identities = 147/188 (78%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || || ||||| || |||||||| || || ||||||||||| || Sbjct 45922 AGGACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTCCTTCCGTCC 45981 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| || || |||||||| || || | || ||||||||| Sbjct 45982 TCGAGCTGCTTGCCCGCGAAGATCAGACGCTGTTGGTCCGGGGGGATACCCTCCTTGTCC 46041 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || ||||||||||| || |||||||| ||||||||| Sbjct 46042 TGGATCTTCGCCTTGACATTGTCAATGGTGTCAGAAGACTCGACCTCGAGGGTGATCGTC 46101 Query 211083 TTTCCCGT 211090 || || || Sbjct 46102 TTGCCGGT 46109 Score = 122 bits (134), Expect = 2e-22 Identities = 120/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 210939 TAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGG 210998 || || | |||||| | || || || ||||||||||| |||||||| || || || ||| Sbjct 47319 TAGTCAGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGG 47378 Query 210999 TCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAG 211058 || ||||| | || ||||||||||||||||| || ||||| ||||||||||| || Sbjct 47379 TCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAA 47438 Query 211059 CTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAG 211093 || || ||||| ||||| |||||||| ||||| Sbjct 47439 GACTCGACTTCGAGGGTGATGGTCTTTCCGGTGAG 47473 Score = 93.3 bits (102), Expect = 1e-13 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 ||||||||||||||| |||||||| || || ||||| || |||||||||||| || Sbjct 46653 CTTGTCCTGGATCTTCGCCTTCACGTTGTCAATCGTGTCGGACGATTCAACCTCGAGGGT 46712 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||||||| || ||||| ||||| || || | |||||| Sbjct 46713 GATCGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 46751 Score = 89.7 bits (98), Expect = 1e-12 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| |||| || || ||||| || || ||||| || |||||||| || |||| | ||| Sbjct 46479 ACGCAGTCGGAGAACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGACAAGGT 46538 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || || ||||||||||| || ||||||||||| || ||||| || |||| || Sbjct 46539 GCGACCGTCCTCGAGCTGCTTGCCGGCAAAGATAAGGCGCTGCTGGTCTGGCGGAATGCC 46598 Query 211013 TTCCTTG 211019 ||| || Sbjct 46599 CTCCCTG 46605 >seq5 Length=1498571 Score = 156 bits (172), Expect = 1e-32 Identities = 149/191 (78%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| || |||| ||||| | || || Sbjct 692052 AGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTTCGGCCGTCC 692111 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| ||||| |||||||| || || | || ||||||||| Sbjct 692112 TCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGTTGGTCCGGGGGGATACCCTCCTTGTCC 692171 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||||||||| || || |||||||| ||||||||| Sbjct 692172 TGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATCGTC 692231 Query 211083 TTTCCCGTGAG 211093 || ||||| || Sbjct 692232 TTGCCCGTAAG 692242 >seq3 Length=1717572 Score = 129 bits (142), Expect = 1e-24 Identities = 122/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 210939 TAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGG 210998 || |||| |||||| | || || || ||||||||||| ||||| || || || |||||| Sbjct 192622 TAGTCCGAAAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATGAGACGCTGTTGG 192681 Query 210999 TCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAG 211058 || || || | || ||||||||||||||||| || ||||| ||||||||||| ||| Sbjct 192682 TCCGGGGGGATACCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAG 192741 Query 211059 CTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || |||||||| ||||| ||||| || |||||| Sbjct 192742 GACTCCACCTCGAGGGTGATGGTCTTCCCGGTGAGA 192777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151183160075