Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20sp._20JCM_2024511_20[genbank_20GCA_5F001600855.1_2020 16-03-01] 55 sequences; 28,180,937 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq18 168 2e-36 seq5 136 9e-27 seq3 98.7 2e-15 >seq18 Length=823183 Score = 168 bits (186), Expect = 2e-36 Identities = 171/223 (77%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| |||| ||||| |||||||| ||||| |||||||||| ||||| |||| | || Sbjct 46758 ACGGAGTCGGAGGACGAGGTGGAGGGTGGACTCTTTTTGGATGTTGTAGTCGGAGAGGGT 46817 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || || ||||| |||||||| || ||||| || || ||||||||||| ||||| || || Sbjct 46818 TCGGCCGTCTTCCAGCTGCTTGCCGGCGAAAATGAGACGTTGTTGGTCTGGCGGGATGCC 46877 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||| ||| ||||| ||||| || | || || || | Sbjct 46878 CTCCTTGTCCTGGATCTTCGCCTTGACATTGTCGATCGTGTCGGACGACTCGACCTCGAG 46937 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 |||||||||||||||||| | || || | ||| | |||||| Sbjct 46938 CGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATT 46980 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || || || || || |||| ||||| ||| || || || || || Sbjct 45922 AGGACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTCCTTCCGTCC 45981 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || |||||||| || || ||||| |||||||| Sbjct 45982 TCGAGCTGCTTGCCCGCGAAGATCAGACGCTGTTGGTCCGGGGGGATACCCTCCTTGTCC 46041 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| || |||||||| || | || || || | ||||||||| Sbjct 46042 TGGATCTTCGCCTTGACATTGTCAATGGTGTCAGAAGACTCGACCTCGAGGGTGATCGTC 46101 Query 225682 TTGCCCGTCAA 225692 ||||| ||||| Sbjct 46102 TTGCCGGTCAA 46112 Score = 120 bits (132), Expect = 7e-22 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| |||| || |||||||| || || || || || |||| ||||| || | | || Sbjct 46194 ACGCAGTCGGAGAACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGT 46253 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| |||||||| || |||||||| || || || ||||| || || ||||| Sbjct 46254 ACGACCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGGATACC 46313 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||| || ||||||||||| || | || || || | Sbjct 46314 CTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCAGACGACTCGACCTCGAG 46373 Query 225672 CGTGATCGTCTTGCCCGTCAA 225692 || || ||||| |||||||| Sbjct 46374 GGTAATGGTCTTTCCCGTCAA 46394 Score = 84.2 bits (92), Expect = 5e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || || || |||||||| || |||||||| || || || ||||| || || || || ||| Sbjct 47337 CCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGGATGCCCTCC 47396 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| |||||||| ||| || ||||||||||| || | || || || | ||| Sbjct 47397 TTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACTTCGAGGGTG 47456 Query 225676 ATCGTCTTGCCCGT 225689 || ||||| || || Sbjct 47457 ATGGTCTTTCCGGT 47470 >seq5 Length=1498571 Score = 136 bits (150), Expect = 9e-27 Identities = 143/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || |||||||| || || || || |||| ||||| || | | |||| || || Sbjct 692052 AGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTTCGGCCGTCC 692111 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || |||||||| || || ||||| |||||||| Sbjct 692112 TCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGTTGGTCCGGGGGGATACCCTCCTTGTCC 692171 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| ||||||||||| || | ||||| || | ||||||||| Sbjct 692172 TGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATCGTC 692231 Query 225682 TTGCCCGT 225689 |||||||| Sbjct 692232 TTGCCCGT 692239 >seq3 Length=1717572 Score = 98.7 bits (108), Expect = 2e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || || || |||||||| || ||||| || || || |||||||| || || ||||| ||| Sbjct 192640 CCGTCCTCGAGCTGCTTGCCGGCGAAAATGAGACGCTGTTGGTCCGGGGGGATACCCTCC 192699 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| |||||||| ||| || ||||||||||| |||| ||||| || | ||| Sbjct 192700 TTGTCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCACCTCGAGGGTG 192759 Query 225676 ATCGTCTTGCCCGT 225689 || ||||| || || Sbjct 192760 ATGGTCTTCCCGGT 192773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192530359638170