Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20sp._20JCM_2024511_20[genbank_20GCA_5F001600855.1_2020 16-03-01] 55 sequences; 28,180,937 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq10 109 4e-19 >seq10 Length=1243995 Score = 109 bits (120), Expect = 4e-19 Identities = 202/292 (69%), Gaps = 11/292 (4%) Strand=Plus/Plus Query 29539 GTAGCCCTCCAGGGAGAAATCCTCTGCCTTAAA---GTCG---TCCAGGCTCTCCACCCT 29592 ||| ||||||| | ||| ||||||| | | || |||| ||| | ||||| || | Sbjct 823061 GTATCCCTCCACGACGAAGTCCTCTGTCCTGAACCCGTCGATGTCCCCGATCTCCTCCTT 823120 Query 29593 ---CCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAG 29649 |||| | | | || ||||| || | |||||| ||||||||||||| | || Sbjct 823121 GGTCCTGGCAAACTTGAGAGTGGGGAACTCGCGGGGCTCTCTCTCGAGCTGAACCTGGAG 823180 Query 29650 CGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTC-TCCCG 29708 ||| ||||| ||||| ||||||||| || || |||| | ||| ||||| | Sbjct 823181 CGGCTCCACATGGTCCTTGTAGACGTGCGCGTCGCCCATCTGGAGGATGAACTCGTGTGC 823240 Query 29709 GTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAA 29768 || ||||| || ||| | || ||||||| ||||||||| ||||| ||||||||| | Sbjct 823241 GTCACAGCCC-GTCACGAGGGCGATCATGTGCGTGAGGAGCGAGTACGAGGCGATGTTGA 823299 Query 29769 AGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAG 29820 | || || ||||| || | ||| | || | ||| || | | |||| ||||| Sbjct 823300 AAGGGACGCCGAGACCGAGGTCGCACGAGCGCTGATACATCAGGCAGGAGAG 823351 Score = 100 bits (110), Expect = 2e-16 Identities = 149/209 (71%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 30015 CGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGA 30074 |||||||||||||||||||||| ||||| ||||| || || || || || || | | Sbjct 823731 CGAAATGCCTCCACTGGAACCCATACACGGGTCCGAGATCGCCTTCCCTCCGATGACCCA 823790 Query 30075 AGCCCCTCTTG-TCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTC 30133 | ||| | | || | | || || || |||||| | |||||||| || | |||||| Sbjct 823791 A-CCCGACGCGATCGAGGTACTCCCTCGACCCGTTGCCTTCCCAGATATTGATCCCCTTG 823849 Query 30134 TCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACG 30193 ||||| || ||||| || ||| | || ||||||||||| |||||||| || || Sbjct 823850 TCGGACAGGACTTTGCCGTCCGTGCAGCCCGCCACGAACCACAGGAGCTCCTCTACCACT 823909 Query 30194 GCCTTCCAAAAGACCCTCTTGGTCGTGAG 30222 || | ||||| | |||||| ||||| Sbjct 823910 CCCCGCAGGAAGACGCGCTTGGTGGTGAG 823938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406162927743730