Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20sp._20JCM_2024511_20[genbank_20GCA_5F001600855.1_2020 16-03-01] 55 sequences; 28,180,937 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq10 113 3e-20 >seq10 Length=1243995 Score = 113 bits (124), Expect = 3e-20 Identities = 203/292 (70%), Gaps = 11/292 (4%) Strand=Plus/Plus Query 27033 GTAACCCTCCAGGGAGAAATCCTCTGCCTTAAA---GTCG---TCCAGGCTCTCCACCCT 27086 ||| ||||||| | ||| ||||||| | | || |||| ||| | ||||| || | Sbjct 823061 GTATCCCTCCACGACGAAGTCCTCTGTCCTGAACCCGTCGATGTCCCCGATCTCCTCCTT 823120 Query 27087 ---CCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAG 27143 |||| | | | || ||||| || | |||||| |||||||||||| || || Sbjct 823121 GGTCCTGGCAAACTTGAGAGTGGGGAACTCGCGGGGCTCTCTCTCGAGCTGAACCTGGAG 823180 Query 27144 CGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTC-TCCCG 27202 ||| ||||| || ||| ||||||||| ||||| |||| | ||| ||||| | Sbjct 823181 CGGCTCCACATGGTCCTTGTAGACGTGCGCGTCGCCCATCTGGAGGATGAACTCGTGTGC 823240 Query 27203 GTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAA 27262 || ||||| || ||| | || ||||||| ||||||||| ||||| ||||||||| | Sbjct 823241 GTCACAGCCC-GTCACGAGGGCGATCATGTGCGTGAGGAGCGAGTACGAGGCGATGTTGA 823299 Query 27263 AGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAG 27314 | || || ||||| || | ||| | ||| | ||| || | | | || ||||| Sbjct 823300 AAGGGACGCCGAGACCGAGGTCGCACGAGCGCTGATACATCAGGCAGGAGAG 823351 Score = 107 bits (118), Expect = 1e-18 Identities = 229/337 (68%), Gaps = 4/337 (1%) Strand=Plus/Plus Query 27382 TTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCC 27441 || ||||||||||| | | || ||| |||||||| || || ||| |||| || Sbjct 823604 TTCGGGTTCCAGGCAGAGAGGACGATCCGCCTGTCGGTCGGATTATTCTTGATCTTATCA 823663 Query 27442 ACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTACC-CTCATGTCCGTGTA 27500 | | | || ||||||||| || | |||| || || | | || |||| || Sbjct 823664 ATCACCTGGGCCAACTGATCCACTCCTTTGCCCGTATAATCATCTTCACACGTCCCA-TA 823722 Query 27501 CTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCT 27560 || || |||||||||||||| |||||||| ||||| ||||| || || || || || Sbjct 823723 ATCCGCCCCGAAATGCCTCCACTGGAACCCATACACGGGTCCGAGATCGCCTTCCCTCCG 823782 Query 27561 GTGCTCGAAGCCCCTCTTG-TCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTA 27619 || | || ||| | | || | | || || || |||||| | |||||||| || | Sbjct 823783 ATGACCCAA-CCCGACGCGATCGAGGTACTCCCTCGACCCGTTGCCTTCCCAGATATTGA 823841 Query 27620 CCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCT 27679 |||||| ||||| || ||||| || ||| | || ||||||||||| ||||||| Sbjct 823842 TCCCCTTGTCGGACAGGACTTTGCCGTCCGTGCAGCCCGCCACGAACCACAGGAGCTCCT 823901 Query 27680 CCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAG 27716 | || || || | ||||| | |||||| ||||| Sbjct 823902 CTACCACTCCCCGCAGGAAGACGCGCTTGGTGGTGAG 823938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369506952314705