Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20sp._20JCM_2024511_20[genbank_20GCA_5F001600855.1_2020 16-03-01] 55 sequences; 28,180,937 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq18 131 4e-25 seq5 86.0 1e-11 >seq18 Length=823183 Score = 131 bits (144), Expect = 4e-25 Identities = 161/220 (73%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||| |||||| || || || || |||||||||||||||||||| |||| | |||| Sbjct 46761 GAGTCGGAGGACGAGGTGGAGGGTGGACTCTTTTTGGATGTTGTAGTCGGAGAGGGTTCG 46820 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || ||||| || || |||||||| || || | || ||||| | || ||| || || Sbjct 46821 GCCGTCTTCCAGCTGCTTGCCGGCGAAAATGAGACGTTGTTGGTCTGGCGGGATGCCCTC 46880 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || || || |||||| | || | |||| || ||| || || || || Sbjct 46881 CTTGTCCTGGATCTTCGCCTTGACATTGTCGATCGTGTCGGACGACTCGACCTCGAGCGT 46940 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || ||||||||||| ||||| ||||||| ||||||| Sbjct 46941 GATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATT 46980 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| ||| ||||| ||||| || ||||| || ||||||||||| || | | || | Sbjct 46198 AGTCGGAGAACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGA 46257 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 || ||||| || || ||||||||||| || | ||||||||||| | ||| || ||| Sbjct 46258 CCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGGATACCCTCC 46317 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || || || ||||| | || | | |||| || ||| || || || ||| Sbjct 46318 TTGTCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCAGACGACTCGACCTCGAGGGTA 46377 Query 152067 ATAGTTTTGCCCGT 152080 || || || ||||| Sbjct 46378 ATGGTCTTTCCCGT 46391 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || || ||||| || ||||||||||| |||| | || | ||||| Sbjct 46996 AGAACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCC 47055 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || |||||||| || || | |||||||||| | ||| || ||||| || Sbjct 47056 TCGAGCTGCTTGCCGGCGAAAATCAGGCGTTGCTGGTCCGGAGGGATACCCTCCTTGTCC 47115 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || ||||| | || | |||| || ||| || || ||||| || || Sbjct 47116 TGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGACGACTCAACCTCGAGAGTGATGGTC 47175 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || |||||||| ||||| | |||||| Sbjct 47176 TTGCCGGTCAGAGTCTTGACGAAAATCTGCAT 47207 Score = 84.2 bits (92), Expect = 5e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| || || || || ||||| || ||||||||||| ||| | || || || || Sbjct 45921 GAGGACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTCCTTCCGTC 45980 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || || |||||||| || | ||| ||||||| | ||| || ||||| || Sbjct 45981 CTCGAGCTGCTTGCCCGCGAAGATCAGACGCTGTTGGTCCGGGGGGATACCCTCCTTGTC 46040 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || || || |||||| | || | | |||| ||| ||| || || || || || || Sbjct 46041 CTGGATCTTCGCCTTGACATTGTCAATGGTGTCAGAAGACTCGACCTCGAGGGTGATCGT 46100 Query 152072 TTTGCCCGT 152080 ||||| || Sbjct 46101 CTTGCCGGT 46109 >seq5 Length=1498571 Score = 86.0 bits (94), Expect = 1e-11 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || || || || || ||||| || ||||||||||| || | | |||| || || Sbjct 692051 GAGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTTCGGCCGTC 692110 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || || |||||||| || | ||| ||||||| | ||| || ||||| || Sbjct 692111 CTCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGTTGGTCCGGGGGGATACCCTCCTTGTC 692170 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || || || |||||| | || | | |||| ||| ||| || || || || || || Sbjct 692171 CTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATCGT 692230 Query 152072 TTTGCCCGTGAG 152083 |||||||| || Sbjct 692231 CTTGCCCGTAAG 692242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153819986916905