Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20sp._20JCM_2024511_20[genbank_20GCA_5F001600855.1_2020 16-03-01] 55 sequences; 28,180,937 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq18 179 8e-40 seq5 147 5e-30 seq3 120 6e-22 >seq18 Length=823183 Score = 179 bits (198), Expect = 8e-40 Identities = 177/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || || || || | ||| |||||||||||||||||||| | Sbjct 46752 ACCACCACGGAGTCGGAGGACGAGGTGGAGGGTGGACTCTTTTTGGATGTTGTAGTCGGA 46811 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||| || || || || || ||||| || || | |||||||||||| ||| Sbjct 46812 GAGGGTTCGGCCGTCTTCCAGCTGCTTGCCGGCGAAAATGAGACGTTGTTGGTCTGGCGG 46871 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| || || || | ||||| ||||| || | ||||| Sbjct 46872 GATGCCCTCCTTGTCCTGGATCTTCGCCTTGACATTGTCGATCGTGTCGGACGACTCGAC 46931 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 ||||| ||||||||||| ||||| | ||||| ||||| ||||||||| Sbjct 46932 CTCGAGCGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATT 46980 Score = 179 bits (198), Expect = 8e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| || || ||||| || || || | || || || |||||||||||||| | Sbjct 46981 CCACCGCGGAGACGAAGAACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAG 47040 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||||||||| || || || ||||| || |||| ||||| ||||| || Sbjct 47041 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATCAGGCGTTGCTGGTCCGGAGGG 47100 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 |||||||||||||| |||||||| || || ||| | ||||| |||||||| | || || Sbjct 47101 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGACGACTCAACC 47160 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||||||||| ||||| || |||| |||||| ||||| |||||||| Sbjct 47161 TCGAGAGTGATGGTCTTGCCGGTCAGAGTCTTGACGAAAATCTGCAT 47207 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || || || || || | ||| || || |||||||||||||| | | Sbjct 46189 CCACCACGCAGTCGGAGAACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAA 46248 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || || || || || || || ||||| ||||| | ||| || ||||| || Sbjct 46249 AGGGTACGACCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGG 46308 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 |||||||||||||| |||||||| || || ||| | ||||| ||||| || | ||||| Sbjct 46309 ATACCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCAGACGACTCGACC 46368 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAA 283078 ||||| || || ||||| |||||||| Sbjct 46369 TCGAGGGTAATGGTCTTTCCCGTCAA 46394 Score = 143 bits (158), Expect = 6e-29 Identities = 156/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || || || || | ||| || || |||||||||||||| Sbjct 45906 ACCACCACGCAGACGGAGGACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 45965 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || | || ||||| || || || || || ||||||| ||| |||||||| || Sbjct 45966 CAGGGTCCTTCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGACGCTGTTGGTCCGGGGG 46025 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| |||||||| || || || | || || ||||| |||| ||||| Sbjct 46026 GATACCCTCCTTGTCCTGGATCTTCGCCTTGACATTGTCAATGGTGTCAGAAGACTCGAC 46085 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAA 283078 ||||| ||||||||||| || ||||| Sbjct 46086 CTCGAGGGTGATCGTCTTGCCGGTCAA 46112 Score = 143 bits (158), Expect = 6e-29 Identities = 124/154 (81%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 282922 TGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTT 282981 ||||||||| ||| |||||||| ||||| || || || ||||| ||||||| ||| || | Sbjct 47317 TGTAGTCAGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCT 47376 Query 282982 GGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCG 283041 |||| || || ||||||||||| |||||||| || || ||| | ||||| ||||||| Sbjct 47377 GGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCG 47436 Query 283042 AAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 ||| ||||||||||| ||||| ||||| || || Sbjct 47437 AAGACTCGACTTCGAGGGTGATGGTCTTTCCGGT 47470 Score = 91.5 bits (100), Expect = 3e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 230223 CTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATT 230282 || ||||||||||| | | |||||| | ||||| ||||| || || || || ||| | Sbjct 29218 CTCATCGGCATGAACTCCAAGCTCATGTGCCAATACATCGAGTTTGTCGCCGACCGTCTG 29159 Query 230283 TTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAG 230342 |||| || || || |||| || | | ||| ||| |||||||||| || |||||| Sbjct 29158 CTCGTCGCCCTCGGCAACGACAAGATCTGGAACGCCACCAACCCCTTCGACTTCATGGAG 29099 Query 230343 CTCATTTCACTCCAGGGGAAAACTAACTTCTTCGA 230377 | || || |||||||| || | ||||||||||| Sbjct 29098 ATGATCTCGCTCCAGGGCAAGGCGAACTTCTTCGA 29064 Score = 91.5 bits (100), Expect = 3e-13 Identities = 102/134 (76%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG- 282930 |||||||||||| || || || || || | ||| || || |||||||||||||| | Sbjct 46473 ACCACCACGCAGTCGGAGAACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGA 46532 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 |||| ||||| || ||||| || || || ||||||||||| | || || ||||| || Sbjct 46533 CAAG-GTGCGACCGTCCTCGAGCTGCTTGCCGGCAAAGATAAGGCGCTGCTGGTCTGGCG 46591 Query 282991 GAATACCCTCCTTG 283004 |||| |||||| || Sbjct 46592 GAATGCCCTCCCTG 46605 Score = 84.2 bits (92), Expect = 5e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 283001 CTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGT 283060 |||||| |||||||| || || ||| | || || ||||| || | ||| || ||||| || Sbjct 46653 CTTGTCCTGGATCTTCGCCTTCACGTTGTCAATCGTGTCGGACGATTCAACCTCGAGGGT 46712 Query 283061 GATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||||||| || || | ||||| ||||| |||||||| Sbjct 46713 GATCGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 46751 >seq5 Length=1498571 Score = 147 bits (162), Expect = 5e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || || || || | || || || |||||||||||||| | Sbjct 692036 ACCACCACGCAGACGGAGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 692095 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||| ||||| || || || || || ||||||| || |||||||| || Sbjct 692096 GAGGGTTCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGTTGGTCCGGGGG 692155 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| |||||||| || || || | ||||| ||||| |||| || || Sbjct 692156 GATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCCAC 692215 Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075 ||||| ||||||||||| ||||| Sbjct 692216 CTCGAGGGTGATCGTCTTGCCCGT 692239 >seq3 Length=1717572 Score = 120 bits (132), Expect = 6e-22 Identities = 119/154 (77%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 282922 TGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTT 282981 ||||||| | ||| || ||||| ||||| || || || ||||| || || | ||| |||| Sbjct 192620 TGTAGTCCGAAAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATGAGACGCTGTT 192679 Query 282982 GGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCG 283041 |||| || |||||||||||||| |||||||| || || ||| | ||||| ||||||| Sbjct 192680 GGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCG 192739 Query 283042 AAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 | | || || ||||| ||||| ||||| || || Sbjct 192740 AGGACTCCACCTCGAGGGTGATGGTCTTCCCGGT 192773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738462375970