Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20sp._20JCM_2024511_20[genbank_20GCA_5F001600855.1_2020 16-03-01] 55 sequences; 28,180,937 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq18 141 7e-29 seq5 102 6e-17 >seq18 Length=823183 Score = 141 bits (156), Expect = 7e-29 Identities = 159/211 (75%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || ||| ||| |||||||||||||| |||| ||| || |||| ||| Sbjct 46771 ACGAGGTGGAGGGTGGACTCTTTTTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCTTCC 46830 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| || || | ||| || || |||| || | || ||||| ||| Sbjct 46831 AGCTGCTTGCCGGCGAAAATGAGACGTTGTTGGTCTGGCGGGATGCCCTCCTTGTCCTGG 46890 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 |||||| ||| || ||| | || ||||||| || || ||||| | ||| ||||||| Sbjct 46891 ATCTTCGCCTTGACATTGT--CGATCGTGTCGGACGACTCGACCTCGAGCGTGATCGTCT 46948 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | |||||||||||||| |||||||| ||||| Sbjct 46949 TGCCCGTGAGGGTCTTGACGAAGATCTGCAT 46979 Score = 116 bits (128), Expect = 3e-21 Identities = 150/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| || | ||||| | || ||||||||||| |||||| ||||||||||| || Sbjct 46185 CATTCCACCACGCAGTCGGAGAACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTC 46244 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || || |||| || |||||||| ||||| ||||| | ||||||||| || | Sbjct 46245 CGAAAGGGTACGACCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGG 46304 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | ||| ||||| ||| |||||| ||| | | | |||||||| | || || Sbjct 46305 GGGGATACCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCAGACGACTC 46364 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGT 44313 ||||| | ||||| ||||||||||| Sbjct 46365 GACCTCGAGGGTAATGGTCTTTCCCGT 46391 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || || |||||| ||||||||||| |||| ||| ||| | || || Sbjct 46999 ACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCG 47058 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| || |||| || ||||| || | ||| | ||| ||||| ||| Sbjct 47059 AGCTGCTTGCCGGCGAAAATCAGGCGTTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGG 47118 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | || ||||| | || || ||||| | || || ||||| Sbjct 47119 ATCTTGGCCTTGACGTTGTCGATCGTGTCCGACGACTCAACCTCGAGAGTGATGGTCTTG 47178 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || ||||| ||||| || ||||| Sbjct 47179 CCGGTCAGAGTCTTGACGAAAATCTGCAT 47207 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/189 (72%), Gaps = 8/189 (4%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCT--CGTCGT 44186 || ||||| ||||| |||||| ||||||||||| ||| || || || |||| | Sbjct 45925 ACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAG--GGTCCTTCCGTCCT 45982 Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246 | |||||||| || || ||||||| |||||| || || | || | ||| ||||| ||| Sbjct 45983 CGAGCTGCTTGCCCGCGAAGATCAGACGCTGTTGGTCCGGGGGGATACCCTCCTTGTCCT 46042 Query 44247 TTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304 |||||| ||| || ||| | |||||||| | || || ||||| | || ||||| Sbjct 46043 GGATCTTCGCCTTGACATTGT--CAATGGTGTCAGAAGACTCGACCTCGAGGGTGATCGT 46100 Query 44305 CTTTCCCGT 44313 ||| || || Sbjct 46101 CTTGCCGGT 46109 >seq5 Length=1498571 Score = 102 bits (112), Expect = 6e-17 Identities = 139/192 (72%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| ||||| || || |||||| ||||||||||| || | ||| || |||| || Sbjct 692054 CACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTTCGGCCGTCCTC 692113 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| || || ||||||| ||||| || || | || | ||| ||||| ||| Sbjct 692114 GAGCTGCTTGCCCGCGAAGATCAGGCGCTGTTGGTCCGGGGGGATACCCTCCTTGTCCTG 692173 Query 44248 TATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 ||||| ||| || ||| | |||||||||| || |||||||| | || |||||| Sbjct 692174 GATCTTGGCCTTGACATTGT--CGATGGTGTCGGAAGACTCCACCTCGAGGGTGATCGTC 692231 Query 44306 TTTCCCGTGAGG 44317 || ||||| ||| Sbjct 692232 TTGCCCGTAAGG 692243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359990158693935