Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20sp._20JCM_2024511_20[genbank_20GCA_5F001600855.1_2020 16-03-01] 55 sequences; 28,180,937 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq18 158 3e-33 seq3 129 1e-24 seq5 127 5e-24 >seq18 Length=823183 Score = 158 bits (174), Expect = 3e-33 Identities = 159/207 (77%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || ||||| || || || || ||||| |||||||| || || ||| Sbjct 47204 CAGATTTTCGTCAAGACTCTGACCGGCAAGACCATCACTCTCGAGGTTGAGTCGTCGGAC 47145 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| ||||| |||||||| || || |||||||||||||||||| Sbjct 47144 ACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCGGACCAGCAA 47085 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || |||||||| || |||||||| ||||| | || || |||| || ||| || Sbjct 47084 CGCCTGATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAACATC 47025 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || || || || || || || ||| Sbjct 47024 CAGAAGGAGTCGACCCTCCACCTCGTT 46998 Score = 147 bits (162), Expect = 5e-30 Identities = 149/194 (77%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || ||||| || || ||||||||||| || || ||||||||||| |||||||| Sbjct 46391 ACGGGAAAGACCATTACCCTCGAGGTCGAGTCGTCTGACACCATCGACAACGTCAAGGCG 46332 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| |||||||| || || ||||| ||||||||||| || || ||||||||||| || Sbjct 46331 AAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAGCGTCTCATCTTCGCCGGCAAG 46272 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||||||||||| || | || ||| | || || ||| |||| || || || || || || Sbjct 46271 CAGCTCGAAGACGGTCGTACCCTTTCGGACTACAACATCCAGAAGGAGTCGACGCTTCAC 46212 Query 178125 CTTGTTTTGAGACT 178138 |||||| | |||| Sbjct 46211 CTTGTTCTCCGACT 46198 Score = 136 bits (150), Expect = 1e-26 Identities = 141/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || || ||||||||||||||||| || || |||||||| || || ||||| Sbjct 46109 ACCGGCAAGACGATCACCCTCGAGGTCGAGTCTTCTGACACCATTGACAATGTCAAGGCG 46050 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| |||||||| || || ||||| |||||||| || || || |||||||| || || Sbjct 46049 AAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAACAGCGTCTGATCTTCGCGGGCAAG 45990 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 |||||||| || |||||||| || ||| || ||| |||| || || || || ||||| Sbjct 45989 CAGCTCGAGGACGGAAGGACCCTGAGCGACTACAACATCCAGAAGGAGTCGACGCTGCAC 45930 Query 178125 CTTGT 178129 || || Sbjct 45929 CTCGT 45925 Score = 131 bits (144), Expect = 4e-25 Identities = 122/155 (79%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 ||||| ||||| || ||||||||||| || || || ||||||||||| |||||||| Sbjct 47473 CTCACCGGAAAGACCATCACCCTCGAAGTCGAGTCTTCGGACACCATCGACAACGTCAAG 47414 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 ||||| |||||||| || || ||||||||||||||||| || || ||||||||||| Sbjct 47413 GCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAGCAGCGTCTGATCTTCGCCGGC 47354 Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTA 178096 || |||||||| || || | || ||| | || || Sbjct 47353 AAGCAGCTCGAGGACGGCCGCACCCTTTCTGACTA 47319 >seq3 Length=1717572 Score = 129 bits (142), Expect = 1e-24 Identities = 122/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 177941 TCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAA 178000 |||||| || || || ||||||||||||||||| ||| ||||||||||| |||||||| Sbjct 192777 TCTCACCGGGAAGACCATCACCCTCGAGGTGGAGTCCTCGGACACCATCGACAACGTCAA 192718 Query 178001 ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGG 178060 ||||| |||||||| || || ||||| |||||||| || || || || |||||||| Sbjct 192717 GGCGAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAACAGCGTCTCATTTTCGCCGG 192658 Query 178061 AAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTA 178096 || |||||||| || || | || ||| | || || Sbjct 192657 CAAGCAGCTCGAGGACGGCCGTACCCTTTCGGACTA 192622 >seq5 Length=1498571 Score = 127 bits (140), Expect = 5e-24 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 || || || || |||||||||||||||||||| || ||||||||||| || ||||| Sbjct 692242 CTTACGGGCAAGACGATCACCCTCGAGGTGGAGTCTTCCGACACCATCGACAATGTCAAG 692183 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 ||||| |||||||| || || ||||| |||||||| || || || |||||||| || Sbjct 692182 GCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAACAGCGCCTGATCTTCGCGGGC 692123 Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTG 178121 || |||||||| || || | || || | || || ||| |||| || || || || || Sbjct 692122 AAGCAGCTCGAGGACGGCCGAACCCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTC 692063 Query 178122 CATCTTGT 178129 || || || Sbjct 692062 CACCTCGT 692055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730351745670