Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cutaneotrichosporon_20cutaneum_20[genbank_20GCA_5F001636075.1_202016 -05-02] 592 sequences; 38,696,417 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq305 127 3e-24 seq116 127 3e-24 seq403 86.0 8e-12 >seq305 Length=41136 Score = 127 bits (140), Expect = 3e-24 Identities = 180/251 (72%), Gaps = 3/251 (1%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| ||| ||| |||||||| || | || | |||||||| || ||||| Sbjct 41039 CAGGCGAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGTGAGG 40980 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 |||||||| ||||||||||| || ||||| || || || || || || ||||| |||||| Sbjct 40979 CCGGGCATAAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCGAACGAGCCAGAGAAGAAG 40920 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC--ATAACCGGCACT-GTCATGT 42241 || || || || || || |||||||| || | ||| | | || || || ||| Sbjct 40919 ATACCCTCAACGGCGGCGAAGGCAATCAGACGCTCAGCGAACGACGAGCGCTCGTCCGAG 40860 Query 42242 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 42301 ||||| ||||||| || |||||||| || | || || || || || ||||| || Sbjct 40859 ATCCAGCGAAGAGCCCAGTCAGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGCCTTG 40800 Query 42302 AAGAGATAGTT 42312 ||||| ||||| Sbjct 40799 AAGAGGTAGTT 40789 >seq116 Length=111500 Score = 127 bits (140), Expect = 3e-24 Identities = 180/251 (72%), Gaps = 3/251 (1%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || || || ||| ||| |||||||| || | || | |||||||| || ||||| Sbjct 111403 CAGGCAAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGTGAGG 111344 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 |||||||| ||||||||||| || ||||| || || || || || |||||||| |||||| Sbjct 111343 CCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGATCCAGAGAAGAAG 111284 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC--ATAACCGGCACT-GTCATGT 42241 || || || || || || ||||| || || | ||| | | || || || ||| Sbjct 111283 ATACCCTCGACAGCGGCGAAGGCGATGAGACGCTCGGCGAACGACGAGCGCTCGTCCGAG 111224 Query 42242 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 42301 ||||| ||||||| ||||||||||| || | || || || || || ||||| || Sbjct 111223 ATCCAGCGAAGAGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGCCTTG 111164 Query 42302 AAGAGATAGTT 42312 ||||| ||||| Sbjct 111163 AAGAGGTAGTT 111153 >seq403 Length=22752 Score = 86.0 bits (94), Expect = 8e-12 Identities = 147/213 (69%), Gaps = 14/213 (7%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| ||| ||||| ||||| || | || | |||||||| || ||||| Sbjct 10725 CAGGCGAAGTCGGTGTGCATGCCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGG 10784 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 ||| |||| || |||||||| || ||||| || || | ||| ||||| || || |||||| Sbjct 10785 CCGCGCATCAGACCACGCTTCTTGAGCCAGAAGATGGCCGCGAATGAGCCCGAGAAGAAG 10844 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTC-------CATAACCGGCACTGTC 42237 || || || || ||||||||| || || | | | |||| | || ||| Sbjct 10845 ATGCCCTCAACACACGCAAAGGCGATCAGACGCGTGCGGAAGGGCATATCTGG---TGTG 10901 Query 42238 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 42270 ||||| ||| | ||||| ||||||||||| Sbjct 10902 ATGTA----CTTGAGCGCCCAGTCGGCCTTCTT 10930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671134233569920