Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cutaneotrichosporon_20guehoae_20[genbank_20GCA_5F001600415.1_202016- 03-01] 35 sequences; 33,698,914 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq18 95.1 1e-14 seq6 91.5 1e-13 seq3 87.8 2e-12 seq7 86.0 5e-12 >seq18 Length=639095 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||| || | || | || |||||||| || ||||| || || | | Sbjct 12712 CCACCACGCAGGCGGAGAACGAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCAGAC 12653 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || || ||||||| ||||| || ||||| |||| || | ||||||||| || Sbjct 12652 AATGTGCGGCCGTCCTCGAGCTGCTTTCCCGCGAAAATGAGACGCTGCTGGTCGGGAGGA 12593 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| ||||| | | ||| || || | ||| Sbjct 12592 ATGCCCTCCTTGTCCTGGATCTTGCTCTTCACGTTGTCGATCGTGTCGGAAGACTCGACC 12533 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| |||||||||||||| | || ||||| || || ||||| Sbjct 12532 TCAAGGGTGATGGTCTTGCCGGTAAGGGTCTTGACGAAGATCTGCAT 12486 >seq6 Length=2162681 Score = 91.5 bits (100), Expect = 1e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 23811 GTTGCCCAGGTCGCCGACGTGTCGCTCCGCGGCGTCGGGCGCGCCGTGTCTCTGGCGGGT 23870 |||||| ||||| |||||||| || | | |||||||||||||||||| ||| | | Sbjct 1199138 GTTGCCGAGGTCACCGACGTGGCGGTTCTTGGCGTCGGGCGCGCCGTGCGTCTTGTCGTA 1199079 Query 23871 GGGGTTAAAGTGCTCGCCAGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAATTCGTGCAC 23930 ||||||||||| |||| | ||| | ||||||| | ||||||| || |||||| Sbjct 1199078 AGGGTTAAAGTGGCCGCCGGTGGAAGCGCAGCCGCCGGAAATGTCGCCAAACGTGTGCAC 1199019 Query 23931 GTGAAAACCGTGC 23943 ||| || |||||| Sbjct 1199018 GTGGAAGCCGTGC 1199006 >seq3 Length=2791342 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || |||||||| || ||||| ||||||| ||||| || ||||||| ||||| ||||| Sbjct 1929929 GTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 1929870 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || | || || | ||||||||| ||| | ||| |||||||| |||||| || Sbjct 1929869 GCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 1929810 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGT 21151 || | | ||| || || | |||| || | ||| ||||||||||| || Sbjct 1929809 ACGTTGTCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATGGTCTTGCCCGT 1929757 >seq7 Length=1438143 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 23809 ACGTTGCCCAGGTCGCCGACGTGTCGCTCCGCGGCGTCGGGCGCGCCGTGTCTCTGGCGG 23868 |||||||| ||||| |||||||| ||||| | | || ||| ||||||| ||| || | Sbjct 194029 ACGTTGCCGAGGTCACCGACGTGGCGCTCGGTGTCGGTGGGGCCGCCGTGGTTCTTGCCG 194088 Query 23869 GTGGGGTTAAAGTGCTCGCCAGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAATTCGTGC 23928 |||||| ||||| |||| || || ||||||||||| | |||| ||| | | ||| Sbjct 194089 TGGGGGTTGAAGTGGGCGCCGGCCGAGGTGCAGCCGTTCGAGTTGTCACCGTACTGGTGG 194148 Query 23929 ACGTGAAAACCGTGC 23943 | ||| || ||| || Sbjct 194149 ATGTGGAAGCCGCGC 194163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422259019880060