Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cutaneotrichosporon_20oleaginosus_20[genbank_20GCA_5F001027345.1_202 015-06-12] 180 sequences; 19,835,558 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq70 114 3e-20 seq5 105 1e-17 seq55 100 6e-16 seq12 100 6e-16 seq54 89.7 1e-12 >seq70 Length=102519 Score = 114 bits (126), Expect = 3e-20 Identities = 136/182 (75%), Gaps = 3/182 (2%) Strand=Plus/Plus Query 280179 GGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCC 280238 || ||||| ||| |||| ||||| ||||| |||| |||| || || |||||| || || Sbjct 45318 GGCCCCAACGGTTCGGGCAAGTCCACCCTCGTCAAGCTCCTCACCGGTGAGACCGAGCCC 45377 Query 280239 A--CTGAGGGGT-CCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCAC 280295 | || | || |||| |||||||| |||||| | || | |||||| || |||||| Sbjct 45378 AACCTCGGCGGCACCGTGTGGAAGCACCCCAACCTCGTTATTGGTTACGTTGCCCAGCAC 45437 Query 280296 GCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGC 280355 || ||||||||||| || ||||||| |||| |||||| | | ||||| | |||||| Sbjct 45438 GCGTTCCACCACATTGACCACCACCTCGACAAGACTCCCCTCGAGTACATGCTCTGGCGC 45497 Query 280356 TA 280357 || Sbjct 45498 TA 45499 Score = 100 bits (110), Expect = 6e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758 ||||| || ||||| ||||||||||||||||| ||||| | || ||||| | | Sbjct 44835 GGTTCGCTTTCGGGCGGTTGGAAGATGAAGCTCGCCCTTGCCCGTGCCATCATCTTCAAG 44894 Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818 ||||| | || || || || ||||| ||||||||| ||||| | |||| | ||||| Sbjct 44895 GCCGACATTCTCCTTCTGGACGAGCCCACCAACCACCTGGACGTCGTCAACATCACCTGG 44954 Query 279819 CTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCT 279878 || ||| |||||| || || | ||| | || |||| |||||||||||||| Sbjct 44955 CTCGTGGACTACCTCACGTCGCTCACGAACTGCACGTCTATCATGGTCTCTCACGACTCG 45014 Query 279879 GGCTTCCT 279886 | |||||| Sbjct 45015 GACTTCCT 45022 Score = 89.7 bits (98), Expect = 1e-12 Identities = 159/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 280701 ACTCACT-CTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGC 280759 |||||| |||| || || ||||| ||||| |||||||||||||| ||||| | || || Sbjct 45858 ACTCACAACTCG-ATGCGTGGTCTGTCTGGTGGCCAGAAGGTCAAGGTTGTCCTTGGTGC 45916 Query 280760 AGCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCG 280819 || |||| | ||| ||| | ||| | |||||||| |||||||| || ||||| Sbjct 45917 CGCCACCTGGCGCCGCCCCCACATTATCTGCTTGGACGAGCCCACCAACTACCTCGACCG 45976 Query 280820 CGAGAGCCTGGGCGCTCTGAGTGCTGCTCTGGACACATTTGGCGGCGGCGTCGTAGTCAT 280879 |||| || | |||||| | || || || | | || | || || ||| | ||||| Sbjct 45977 CGAGTCGCTCGCCGCTCTCACCGCCGCCCTCAAGAACTTCGAGGGTGGTGTCCTTGTCAT 46036 Query 280880 TTCTCACAGCACAGAATTTGTC-AAGTCTGTGTGCTCCGAGATGTGG 280925 | | |||| || || | || || || ||| ||||| ||| | ||| Sbjct 46037 TACCCACAACA-AGGAGTTCTCGGAGGGTGTCTGCTCTGAGGTTTGG 46082 >seq5 Length=484505 Score = 105 bits (116), Expect = 1e-17 Identities = 388/603 (64%), Gaps = 10/603 (2%) Strand=Plus/Minus Query 218506 ATCCCCGTCCCTGACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAG 218565 || ||| || | ||||| || ||||||| ||||| || ||||| ||| | | Sbjct 151893 ATTCCCATCTCGGACTTTGTCAACAAGGAACTCATCCTCTTCTCC----ATGGCGGACAA 151838 Query 218566 CGTTCTAT---TCCCAGC-GTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTT 218621 | | | || ||||| | || | |||||| ||||| || ||||| ||| || | || Sbjct 151837 CATACGATCGATCCCATCAGTTGCGGATGGTCTCAAACCGGGTCAGCGCAAGGTCATGTT 151778 Query 218622 TGCCGCATTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGT 218681 | || ||||| || ||| ||||| ||||| | ||| | |||||| || Sbjct 151777 CGGTTGCTTTAAGCGCAATCTGAAGGGCGAAATCAAGGTTGTTCAACTCGGTGGTTACGT 151718 Query 218682 ATCCGAAATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCAT 218741 |||| | ||| | || || ||||| || |||||| || || ||||||| || | Sbjct 151717 CGCCGAGAATTCGGCGTATCACCACGGCGAACAGAGTTTGACGGCGACCATTGTCGGTCT 151658 Query 218742 GGCACAGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGG 218801 || ||| ||| ||| ||||| |||||||| || | || ||||||||||||||||| Sbjct 151657 TGCGCAGAACTTTGTCGGCAGCAACAACATCAATCTTCTTGAGCCCAACGGTCAGTTTGG 151598 Query 218802 TTCTCGTCTATTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGTC 218861 | |||| | || || ||||| || || | || || || || | || Sbjct 151597 TACTCGCATGCAAGGCGGCAAGGACGCGGCAAGCGCGCGTTACATTTTCACCACCACATC 151538 Query 218862 GCCCGTGACGCGCCAGGTGTTCAATCAGGCCGATGATGTGCTCCTTAAGTATCTTGAGGA 218921 | |||||||| |||||| | | | |||||| || || || || || ||| Sbjct 151537 TGCGATGACGCGCGCTGTGTTCCACCCCGACGATGACCCACTTCTCAACTACCTCATGGA 151478 Query 218922 CGATGGTTCTTCG-ATTGAGCCCGAGTGGTATGTGCCTGCTATTCCGTTTTTGCTCGTAA 218980 || || | || |||||||| |||| || | ||| | | || | | ||| | | Sbjct 151477 GGACGG-CCAGCGCATTGAGCCGGAGTACTACCTTCCTACCGTGCCCCTAGTCCTCATCA 151419 Query 218981 ATGGTGCCAATGGTATCGGGACAGGGTTCAGTACTGACATTCCTTCTTACAATCCCAAGG 219040 | || ||| | || || || || || | || || | ||||| ||||| ||| | Sbjct 151418 ACGGGGCCGACGGCATTGGAACTGGATGGAGCACCCAAATTCCCAACTACAACCCCGTCG 151359 Query 219041 ACATCATTGACAACGTCAAGCGTCTCATATCTGGCAAGGAGATGGTACCGATGTCTCCGT 219100 ||||| |||||||| || |||||| || || | ||| |||||| |||| | || | Sbjct 151358 ACATCGTTGACAACCTCCGGCGTCTAATGCGGGGAGAAGAGTTGGTACAGATGACCCCCT 151299 Query 219101 GGT 219103 ||| Sbjct 151298 GGT 151296 >seq55 Length=129735 Score = 100 bits (110), Expect = 6e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| || ||||| | ||||||||||||||||||||| || Sbjct 78627 TCGAAGAAGTTGGCCTTGCCCTGGAGCGAGATCATCTCCATGAAGTCGAAGGGGTTGGTC 78568 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | || | |||||| | ||| || || |||| | |||||| || || ||||| | Sbjct 78567 GAGTTCCAGATCTTGGGGTTGCCGAGGGCGACGAGCAGGCGGTCGGCGACGAACTCGATG 78508 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACA-AGGAATTGCCTCACAGAT 251741 ||||| | ||| || | | ||||||||| || | ||| | |||| ||||| || Sbjct 78507 TACTGGCACATGAGCTTGGCGTTCATGCCGAT-AAGCGAGACGGGAAGGGCCTCGGTGAG 78449 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTC 251768 ||| |||| ||| | | || ||||| Sbjct 78448 GAACTCCTGCTCGATCTCGACGGCCTC 78422 >seq12 Length=320571 Score = 100 bits (110), Expect = 6e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 279693 CCAGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTA 279752 || |||| || || ||||||||||||||||||||||| | ||| | | || || || Sbjct 176175 CCCGTAGCCTCGCTATCGGGTGGTTGGAAGATGAAGCTCGAGCTCGCCAGAGCTATGCTC 176116 Query 279753 CTGCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTA 279812 | | ||||| | || || || |||||||| || |||||| | ||| | || Sbjct 176115 ATCGGCGCCGACATTCTCCTCCTCGATGAGCCGACTAACCACCTCGACGTTCAGACTGTC 176056 Query 279813 GCCTGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCAC 279872 |||||||| | | |||||| | | | || || || ||| ||||| || || ||| Sbjct 176055 GCCTGGCTTGAGAACTACCTCAACGGCCTCTCCAACGTCACTTGTCTCATCGTGTCGCAC 175996 Query 279873 GACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAG 279920 ||||| |||||||| || ||||||| | | ||| || ||||| ||| Sbjct 175995 GACTCCGGCTTCCTTGACAACGTGTGCACGGACATTATGCACTACGAG 175948 Score = 98.7 bits (108), Expect = 2e-15 Identities = 137/190 (72%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 280170 GGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAG 280229 |||||||| || ||||| ||||| || ||||| ||||| ||||| |||| || || ||| Sbjct 175698 GGTGTCATCGGTCCCAACGGTGCTGGCAAGTCGACCCTCATCAAGCTCCTCACCGGTGAG 175639 Query 280230 ACCCAGGCCACTGAGGGGTCCGTTTGGA--AGCATCCCAACATGCGGATGGCTTACGTCG 280287 ||| ||| ||||| | || || | |||| || | || | | ||||| | Sbjct 175638 ACCGTCCCCAACGAGGG--CAGTGTGCACAAGCACCCGGCTCTCCGTGTCGGCTACGTTG 175581 Query 280288 CTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTC 280347 |||||||||| |||||||||||| | | ||||| || | |||| | ||| ||||| | Sbjct 175580 CTCAGCACGCGTTCCACCACATCAACCAGCACCTCGAGAAGACTGCCGTCCAGTACATCC 175521 Query 280348 AGTGGCGCTA 280357 ||||||| || Sbjct 175520 AGTGGCGTTA 175511 >seq54 Length=131832 Score = 89.7 bits (98), Expect = 1e-12 Identities = 165/237 (70%), Gaps = 10/237 (4%) Strand=Plus/Plus Query 293115 CTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCACTGTCTTCATAGA 293174 ||||| ||| |||| || || ||||| || ||||| || ||||| || | |||| || Sbjct 60985 CTGCGACTGGTCGATGAACGCTCCACGGTCGGCAGCAAGCTCAATGACGGCCTTCTGCGA 61044 Query 293175 GATCTCCCACGATGTCTTGTACACTGCCTTGA---CATCA-GGATGAATGCCAATAACCT 293230 ||||||||| |||||||| | ||||||| ||||| ||||| || || | Sbjct 61045 GATCTCCCAGACCGTCTTGTAAATGGCCTTGATGTCATCAGGGATG-TTGGGTAT---GT 61100 Query 293231 TCTGGATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCAAGTCCCAC 293290 ||||||| || || | |||||||||||| |||||||||| | ||| ||| | ||| Sbjct 61101 TCTGGATCGAACCACGGTTGGCAATAATGAGGTTCTTCATGTTGTCGTCCCAGATGCCAA 61160 Query 293291 GAGCAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAG 293347 | || || ||||| | ||| | | | || || |||| ||||| |||||| Sbjct 61161 GGTTGATCAGGTCGCGCAGAAGCCAGGGGCACACGACCTGGAAGTCACC--CGAGAG 61215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027834429551380