Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cutaneotrichosporon_20oleaginosus_20[genbank_20GCA_5F001027345.1_202 015-06-12] 180 sequences; 19,835,558 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq119 125 8e-24 seq2 116 4e-21 seq14 113 5e-20 >seq119 Length=35684 Score = 125 bits (138), Expect = 8e-24 Identities = 145/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| ||||| || | ||||| ||| |||| || |||||||| ||||| || Sbjct 1040 CTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGCCCGTCCTCAAGCTGCTTGCCAGCAAA 1099 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | ||| | || |||||||||| ||| || |||| ||| Sbjct 1100 GATGAGACGCTGCTGGTCAGGTGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGA-CGT 1158 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | |||||| ||| || || || | ||||| || ||||| || || ||||| | Sbjct 1159 TGTCGATCGTGTCTGACGACTCGACCTCAAGGGTGATCGTCTTGCCGGTCAGAGTCTTGA 1218 Query 42196 CAAAGATTTGCAT 42208 | ||||| ||||| Sbjct 1219 CGAAGATCTGCAT 1231 Score = 107 bits (118), Expect = 2e-18 Identities = 143/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | ||| | ||||| || |||||| ||||| ||||| || | ||| || ||| | Sbjct 738 ACGGAGCACGAGGTGCAACGTCGACTCCTTCTGAATGTTGTAGTCCGACAGCGTACGCCC 797 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || |||||||| || ||||| || || ||||||||||||| || | || |||||| Sbjct 798 GTCCTCCAGCTGCTTGCCGGCGAAAATAAGGCGCTGCTGGTCGGGAGGGATGCCCTCCTT 857 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 |||| ||| || |||| ||| | | | |||||| || || || |||| ||| | Sbjct 858 GTCCTGGATCTTGCTCTTGA-CGTTGTCAATCGTGTCAGAGGACTCGACCTCGAGCGTAA 916 Query 42172 TGGTTTTGCCCGTTAG 42187 |||| ||||| || || Sbjct 917 TGGTCTTGCCAGTCAG 932 Score = 95.1 bits (104), Expect = 1e-14 Identities = 128/173 (74%), Gaps = 4/173 (2%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| ||||| || | ||||| ||| |||| || |||||||| || ||||| Sbjct 1268 CTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGCCCGTCCTCGAGCTGCTTGCCGGCGAA 1327 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 || || ||||||||||||| || | || |||||||||| ||| | || | |||| || Sbjct 1328 GATAAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCC-TGAATCTTGGACTTGA-CG 1385 Query 42136 TCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAG 42187 | | | | ||||| || || || || | |||||||| ||||| || || Sbjct 1386 TTGTCGATAGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAG 1438 >seq2 Length=620658 Score = 116 bits (128), Expect = 4e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || | || || || |||| || |||||||| |||||||| Sbjct 114284 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAA 114343 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||||| || | || |||||||||| ||| || |||| ||| Sbjct 114344 GATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGA-CGT 114402 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | ||||| || || || |||| |||||||| |||||||| || ||||| | Sbjct 114403 TGTCGATGGTGTCCGAGGACTCGACCTCGAGAGTGATGGTCTTGCCCGTGAGGGTCTTGA 114462 Query 42196 CAAAGATTTGCAT 42208 | || || ||||| Sbjct 114463 CGAAAATCTGCAT 114475 >seq14 Length=296601 Score = 113 bits (124), Expect = 5e-20 Identities = 134/179 (75%), Gaps = 2/179 (1%) Strand=Plus/Plus Query 42031 TGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCT 42090 |||| || | || || || |||| || |||||||| || ||||| ||||| ||||||| Sbjct 201513 TGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCT 201572 Query 42091 GGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCG 42149 |||||| || | || |||||||||| ||| || |||| ||| | | | ||||||| Sbjct 201573 GGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCGATCGTGTCG 201631 Query 42150 CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || || |||| |||||||| |||||||| || ||||| || ||||| ||||| Sbjct 201632 GAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGAGTCTTGACGAAGATCTGCAT 201690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543211577771200