Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cutaneotrichosporon_20oleaginosus_20[genbank_20GCA_5F001027345.1_202 015-06-12] 180 sequences; 19,835,558 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq24 141 3e-28 seq119 134 4e-26 seq2 93.3 1e-13 >seq24 Length=230441 Score = 141 bits (156), Expect = 3e-28 Identities = 402/615 (65%), Gaps = 2/615 (0%) Strand=Plus/Minus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 ||||| || || || || ||||| | | || |||||||| | ||||| || || | Sbjct 198582 CCCGAGGAGATCTCCTCCATGGTCCTCATCAAGATGAAGGAGACCGCTGAGGCTTACCTT 198523 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 |||| || || | | ||||| | || || || ||||| || || || | |||||| Sbjct 198522 GGTGGCACCGTCTCCAAGGCTGTCGTCACCGTCCCCGCCTACTTCAACGACTCGCAGCGT 198463 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 || || || || || || | ||| || || | | || || | || || || || Sbjct 198462 CAGGCCACCAAGGACGCCGGTACCATCGCTGGTCTCGAGGTCCTCCGTATCATCAACGAG 198403 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771 ||||| || || || || || || || || || || | | ||| || || || | Sbjct 198402 CCCACCGCCGCCGCTATCGCTTACGGCCTCGACAAGAAGTCTGAGGGCGAGAAGAACGTC 198343 Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831 || || || || | ||||||||||| || || || || || || || |||| ||||| Sbjct 198342 CTCATCTTCGACCTTGGTGGTGGTACCTTCGACGTGTCGCTCCTGACCATTGAGGAGGGC 198283 Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAAT 349891 || ||||| || || || ||||| ||||| || || |||||||| || || ||||| || Sbjct 198282 ATCTTTGAGGTCAAGGCTACTGCCGGTGACACCCACCTTGGTGGTGAGGACTTTGACAAC 198223 Query 349892 CGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAG-CTAAAATTGATATTGGAGA 349950 |||||||| || ||||| | || || ||||| |||| || | || || Sbjct 198222 CGTCTCGTCAACCACTTTGTCCAGGAGTTCAAGCG-CAAGAACAAGAAGGACATCACCTC 198164 Query 349951 TAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATC 350010 || | | || | ||||| || | || || || || ||||||||||| | | || Sbjct 198163 GAACGCCCGTGCTCTCCGTCGTCTCCGCACCGCTTGCGAGCGTGCTAAGCGCACTCTCTC 198104 Query 350011 ATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTC 350070 || | | || ||||| || || || || || || || |||| || |||| | Sbjct 198103 GTCGGCCGCTCAGACCTCGATCGAGATCGACTCGCTCTACGACGGCATTGACTTCTACAC 198044 Query 350071 ATCTATTACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGA 350130 || || || |||||||| || || || | || ||| || || | | || ||||| Sbjct 198043 CTCGATCACCCGTGCTCGCTTCGAGGAGCTCTGCCAGGACCTCTTCCGCTCGACCATGGA 197984 Query 350131 TCCTGTGGAAAAAGT 350145 || ||||| || || Sbjct 197983 GCCCGTGGAGAAGGT 197969 >seq119 Length=35684 Score = 134 bits (148), Expect = 4e-26 Identities = 159/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 ||||| || || || |||||||| || ||||| || || || || | || ||||| || Sbjct 1020 AGAACGAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGCCCGTCC 1079 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 ||||| || || ||||||||||| ||||| ||||| ||||| ||||| || || || ||| Sbjct 1080 TCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCAGGTGGAATGCCCTCCTTGTCC 1139 Query 140646 TGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGT 140704 || || || ||| || || || || |||| || || | || || ||||| || | || Sbjct 1140 TGGATCTT-GCTCTTGACGTTGTCGATCGTGTCTGACGACTCGACCTCAAGGGTGATCGT 1198 Query 140705 CTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| ||||| || || || || || |||||||| Sbjct 1199 CTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 1231 >seq2 Length=620658 Score = 93.3 bits (102), Expect = 1e-13 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||| || || | | ||||| || || || || ||||| || || || || || || Sbjct 114245 CATACCGCCGCGAAGACGAAGAACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTC 114304 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || || || || || ||||| ||||| || || ||||| || || Sbjct 114305 CGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCGGG 114364 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || | || || || || || | || || | || Sbjct 114365 GGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTGTCCGAGGACTC 114424 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| || || || || || || ||||||||||| Sbjct 114425 GACCTCGAGAGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAAATCTGCAT 114475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515250905444540