Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidiopsis_20lactophilus_20[genbank_20GCA_5F001599975.1_202016 -03-01] 19 sequences; 22,180,604 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq5 159 4e-34 seq1 122 9e-23 seq2 96.9 4e-15 >seq5 Length=3070904 Score = 159 bits (176), Expect = 4e-34 Identities = 208/288 (72%), Gaps = 0/288 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| ||||||| ||| || ||| |||||| | |||||||| |||||| | Sbjct 1666091 GAGCCTCTGCTGCAAGAGGCGCCGGACCGCTTCGTGCTCTTCCCCATCACCTACCCGTCC 1666150 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||||| | ||||| | |||| ||| || |||||||| | |||||| | || ||| Sbjct 1666151 ATCTGGCGCTTCTACAAGACGGCCATGGCCTCCTTCTGGACGGCGGAGGAGATCGATCTG 1666210 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCAC 116755 || | ||| ||||| | | | || | ||||||||| ||||||| ||| Sbjct 1666211 TCACACGACCTCGCCGACTTCCAAAAGCTCACCGCCGGCGAGCGCCACTTCATCATCCAC 1666270 Query 116756 GTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTC 116815 || || ||||| |||||| || ||||||| ||||||||||||| ||| ||||||| ||| Sbjct 1666271 GTCCTCGCCTTCTTCGCCTCCGCCGACGGCGTCGTCAACGAGAACCTGATCGAGCGGTTC 1666330 Query 116816 GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAG 116863 | | |||||||| | ||| ||||| ||||||| || || || ||| Sbjct 1666331 TCAAACGAGGTGCAAGCGGCAGAGGCCAGGTGCTTTTATGGTTTCCAG 1666378 Score = 107 bits (118), Expect = 2e-18 Identities = 92/114 (81%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 117086 TTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAAC 117145 ||||| | ||||| ||||||||||| ||||| | ||||| |||||||| ||| |||| Sbjct 1666793 TTCGCGTCAATATTCTGGCTCAAGAAGCGCGGTTTAATGCCGGGCCTGACCTTCTCCAAC 1666852 Query 117146 GAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTC 117199 |||||||||||| | ||||| || ||||| |||||||||||| |||| ||| Sbjct 1666853 GAGCTCATCTCCCGCGACGAAGGCCTGCACACCGACTTTGCCTGCCTGCTCTTC 1666906 >seq1 Length=5326569 Score = 122 bits (134), Expect = 9e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 117086 TTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAAC 117145 ||||| |||| || ||||||||||| |||||||||||||||||||| || ||| |||| Sbjct 653950 TTCGCTTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAAC 653891 Query 117146 GAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCAT 117205 |||||||||||| | |||||||| ||||| |||||||||||| | || ||| || Sbjct 653890 GAGCTCATCTCCCGCGACGAGGGCCTGCACACCGACTTTGCCTGCCTCCTCTTCTCCCAC 653831 Query 117206 TTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATC 117265 | || ||||| | | | ||||| || ||| || || || |||| || Sbjct 653830 CTCAAGCGCCGACCCCACCCAGACACCGTCAAGGCCATCATCGAGGAGGCCGTCGAGATT 653771 Query 117266 GAGCAGCGCTTCCTCACCGAAGCGCTGCCGGT 117297 ||| || ||||| ||||| || ||||| || Sbjct 653770 GAGAAGGAGTTCCTTACCGACGCCCTGCCCGT 653739 Score = 120 bits (132), Expect = 3e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 116948 TTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGG 117007 || ||| | |||||||| || |||||| |||| |||||||||| ||||| || |||| Sbjct 654145 TTCAACTCGATCGAGACCATCCCGTGCATCAAGAAGAAGGCCGACTGGGCCCTCAACTGG 654086 Query 117008 ATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGC 117067 |||| || || || ||| | || ||||||||||| || |||||||| |||||||||||| Sbjct 654085 ATCGGCGACAAGGACGCCACTTTTGGCGAGCGCCTCGTCGCCTTCGCCGCCGTCGAGGGC 654026 Query 117068 GTCTTCTTTTCGGG 117081 ||||||| || || Sbjct 654025 ATCTTCTTCTCCGG 654012 Score = 107 bits (118), Expect = 2e-18 Identities = 125/168 (74%), Gaps = 3/168 (2%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||||||||||| ||| | || |||||| | |||||||| | |||| || Sbjct 654634 GAGCCGCTGCTGCAGCCCAACGACAAGCGCTTCGTGCTCTTCCCCATCAAGTACCACGAG 654575 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||| ||||| || ||||||||||||| ||||||| |||||||| Sbjct 654574 ATCTGGCAGGCGTACAAGCGCGCCGAAGCCTCGTTCTGGACCGCCGAGGAGATGGACCTG 654515 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGC 116740 ||||||||| | |||||||||| | | ||||||||||||||| Sbjct 654514 TCCAAGGACTTGCACGACTGGGAGAACAGGCTCAACGACAACGAGCGC 654467 Score = 102 bits (112), Expect = 8e-17 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||||| |||||||||||||||| ||| ||||||||||||||||| ||| ||||||| Sbjct 654392 CACGTCTTGGCCTTTTTCGCCGCGTCCGATGGCATCGTCAACGAGAACCTGCTCGAGCGC 654333 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAG 116863 ||| | | || || || | || ||||| || |||||||| ||||||||| Sbjct 654332 TTCTCCAACGAAGTCCAAGCCGCTGAGGCCCGCTGCTTCTATGGCTTTCAG 654282 Score = 100 bits (110), Expect = 3e-16 Identities = 125/168 (74%), Gaps = 4/168 (2%) Strand=Plus/Plus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGC--TCAAGG 40771 || ||||| ||||||||| | || ||||| | ||||| || | | ||| |||||| Sbjct 2645411 ACCGGCAAGACCATCACCTTGGAGGTCGAGAGCTCCGACT-CGATCGA-CGCCGTCAAGG 2645468 Query 40772 AAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCA 40831 || || | ||||| ||||||||||| | ||||||||||| || |||| || |||| Sbjct 2645469 CGAAGATCCAGGACAAGGAGGGCATCCCACCTGACCAGCAACGCCTGATCTTTGCTGGCA 2645528 Query 40832 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879 | ||| |||| || | | ||||| |||||||||||||||||||| Sbjct 2645529 AGCAGTTGGAGGATGGCAGGACCCTGTCCGACTACAACATCCAGAAGG 2645576 >seq2 Length=4543988 Score = 96.9 bits (106), Expect = 4e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 ||||||| ||||| |||||||||||| | |||||||| || | |||| ||| ||||| Sbjct 1346014 AAAATTCAAGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCTTGATCTTCGCCGGCAAG 1345955 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879 ||||| || |||| || ||| | |||||||||||||||||||| Sbjct 1345954 CAGCTCGAGGACGGCCGGACCTTGTCCGACTACAACATCCAGAAGG 1345909 Score = 84.2 bits (92), Expect = 2e-11 Identities = 113/154 (73%), Gaps = 4/154 (3%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || || || ||||||||| | || |||||| | | | Sbjct 1347143 ATGCAGATCTTCGTCAAGACCTTGACTGGGAAGACCATCACCTTGGAAGTCGAATCGAGC 1347084 Query 40750 GACAGCGTGCAAACGCT--CAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 ||| || | | |||| ||||| || || | ||||| ||||||||||| | |||| Sbjct 1347083 GACT-CGATCGA-CGCTGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACC 1347026 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGA 40841 |||| || || |||| ||| ||||| ||||| || Sbjct 1347025 AGCAGCGCCTGATCTTCGCTGGCAAGCAGCTCGA 1346992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219077635440