Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidiopsis_20lactophilus_20[genbank_20GCA_5F001599975.1_202016 -03-01] 19 sequences; 22,180,604 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq2 104 2e-17 seq1 93.3 3e-14 >seq2 Length=4543988 Score = 104 bits (114), Expect = 2e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 34243 CTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTAT 34302 ||||||||| ||||| || || |||||||||||| || | || ||||||||| || Sbjct 1346997 CTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGAT 1347056 Query 34303 CTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCC 34362 ||| ||| | | || | ||||| ||| |||||||||| |||| |||||||| || || Sbjct 1347057 CTTGGCCTTGACAGCGTCGATCGAGTCGCTCGATTCGACTTCCAAGGTGATGGTCTTCCC 1347116 Query 34363 GGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | || || || ||||||||||| Sbjct 1347117 AGTCAAGGTCTTGACGAAGATCTGCAT 1347143 >seq1 Length=5326569 Score = 93.3 bits (102), Expect = 3e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261 ||||| ||||||||||||||||| | | | || |||||||||||||| || || || Sbjct 2645574 TTCTGGATGTTGTAGTCGGACAGGGTCCTGCCATCCTCCAACTGCTTGCCAGCAAAGATC 2645515 Query 34262 AGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT 34321 || || |||||||| || | || ||||||||| ||||| ||| | || | Sbjct 2645514 AGGCGTTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGGCGTCG 2645455 Query 34322 ATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGT 34365 ||||| |||| ||||| |||| |||||||| |||||||| Sbjct 2645454 ATCGAGTCGGAGCTCTCGACCTCCAAGGTGATGGTCTTGCCGGT 2645411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323071925188640