Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidiopsis_20lactophilus_20[genbank_20GCA_5F001599975.1_202016 -03-01] 19 sequences; 22,180,604 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1 98.7 9e-16 seq2 91.5 1e-13 >seq1 Length=5326569 Score = 98.7 bits (108), Expect = 9e-16 Identities = 304/460 (66%), Gaps = 19/460 (4%) Strand=Plus/Minus Query 22502 GATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGC 22561 || ||| | || ||||| | || ||||| |||| ||||| | |||||| ||||||||| Sbjct 1975243 GAGGTGTAAGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGGGAGGTCGACGCGGTCGGC 1975184 Query 22562 ATCGGCG---CCAACAGTAGCGAGTTTCTCAAGCCG--TGCTTTGAAATTTTACTCTTGA 22616 || |||| |||||| ||| ||| | || |||| || || || || ||||| Sbjct 1975183 ATGGGCGCAACCAACA--AGC-TGTTGCGCAGGCCGCCGGCGATG--ATCTTCTCCTTGA 1975129 Query 22617 GCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACA 22676 | | ||| ||||| || || || || || | ||||||| ||| | || | | Sbjct 1975128 GGCTATCCCACTCCCAAAGGGTGGTAGGGGTGAC---GCCCCACATGTCGAACTGAAGCT 1975072 Query 22677 CGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCG-CGGCAAGT 22735 |||| | ||| |||||||| | | | ||| ||| || || | | ||| ||| || Sbjct 1975071 CGCCCCTGGACGCTGGGCTGCCCTGGAAGGTTGAGTAAGGGCCCTCT-TCGATGGCGAGC 1975013 Query 22736 TCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCA--ATT 22793 ||| | | |||| | ||| ||| || || |||||| ||| | |||||||| | Sbjct 1975012 TCGTTGGACACCTCGAGAGCGGCGTGGTAGATGGTCTCGTGGATCTGCTTGTTCAGGAGA 1974953 Query 22794 CGGCGGCGGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCT 22853 || ||||||| || | ||||| |||| | || ||||||||| || | ||| | Sbjct 1974952 CG--GGCGGCGGGAGAGTCAAAAGGCATGCGCAGCGCCATGAACGCGTCGGCGAGACCTT 1974895 Query 22854 GAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGAT 22913 |||| || | ||||| ||||||| || ||||| || ||||| | | ||| | Sbjct 1974894 GAACACCAACGCCGATGGGTCGGTGCCGCATGTTCGAGTTCTTGGCCTCTTGAACAGGGT 1974835 Query 22914 ACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCAC 22953 | | || |||||| | | ||||||||| | ||| || Sbjct 1974834 AGTAGTTGACATCGATAATGCGGTTCAAGTTGCGGGTGAC 1974795 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/226 (69%), Gaps = 8/226 (4%) Strand=Plus/Minus Query 58029 ATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATA 58088 || || ||| | ||||| |||||||| ||||||||||| || || ||||||| | || Sbjct 653941 ATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATC 653882 Query 58089 TCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAAT 58148 || ||||||||||| || || || || ||||| ||||| | | ||| ||| |||| Sbjct 653881 TCCCGCGACGAGGGCCTGCACACCGACTTTGCCTGCCTCCTCTTCTCCCAC---CTCAA- 653826 Query 58149 AAACCGAC----GCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAA 58204 ||||| | || | || || ||| ||| ||||| |||| ||| || || Sbjct 653825 GCGCCGACCCCACCCAGACACCGTCAAGGCCATCATCGAGGAGGCCGTCGAGATTGAGAA 653766 Query 58205 TGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAAC 58250 ||||| | ||||| ||||| || || || | |||| |||||| Sbjct 653765 GGAGTTCCTTACCGACGCCCTGCCCGTCTCCCTCATCGGCATGAAC 653720 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 23458 CCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTA 23517 ||| ||||||||||| | ||| || || || || | ||| ||||| || || || ||||| Sbjct 1974122 CCATGGCTCGAGGTAGATGGCGAAAGCACCGGGGCGCTTGTTGCCACCTTGGTCAACGTA 1974063 Query 23518 ACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGA 23565 ||||||||||||||| |||| | ||||| ||||||| ||||| || Sbjct 1974062 GCGGGCCGTGTTGTTGAACACGCGGAGCATGGGCACGACGCCGTTCGA 1974015 Score = 86.0 bits (94), Expect = 6e-12 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| || || ||||| |||| ||||| || |||||| | || || || || Sbjct 2644636 CATGCAAATCTTTGTCAAGACCTTGACCGGCAAGACCATCACCTTGGAAGTCGAGAGCTC 2644695 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| || || ||||||||| ||| | ||||||||||| Sbjct 2644696 CGACTCGATCGACGCCGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCA 2644755 Query 31312 GCAGCGTCTAATATTCGCTGGCAA 31335 |||||| || || || ||||| || Sbjct 2644756 GCAGCGCCTGATCTTYGCTGGAAA 2644779 >seq2 Length=4543988 Score = 91.5 bits (100), Expect = 1e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| |||| || || || |||||| | || || ||| || Sbjct 1347144 CATGCAGATCTTCGTCAAGACCTTGACTGGGAAGACCATCACCTTGGAAGTCGAATCGAG 1347085 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| | || ||||||||| ||| | ||||||||||| Sbjct 1347084 CGACTCGATCGACGCTGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCA 1347025 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAG 31339 |||||| || || ||||||||||| ||| Sbjct 1347024 GCAGCGCCTGATCTTCGCTGGCAAGCAG 1346997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766294130480