Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidiopsis_20lactophilus_20[genbank_20GCA_5F001599975.1_202016 -03-01] 19 sequences; 22,180,604 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1 141 2e-28 seq2 138 2e-27 seq4 113 8e-20 seq6 102 2e-16 >seq1 Length=5326569 Score = 141 bits (156), Expect = 2e-28 Identities = 135/173 (78%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || |||||||| || ||||| || ||||| ||||| || |||||||| || || || || Sbjct 2645574 TTCTGGATGTTGTAGTCGGACAGGGTCCTGCCATCCTCCAACTGCTTGCCAGCAAAGATC 2645515 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 || | ||| ||||| ||||| ||||| |||||||| || ||||| ||||||||||| ||| Sbjct 2645514 AGGCGTTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGGCGTCG 2645455 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTT 68446 || | ||| | || || |||||||||||||| || || || | |||||| Sbjct 2645454 ATCGAGTCGGAGCTCTCGACCTCCAAGGTGATGGTCTTGCCGGTCAAGGTCTT 2645402 Score = 113 bits (124), Expect = 8e-20 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || || || || || | || |||||||| || ||||| |||||||| || ||||| Sbjct 2644780 CTTTCCAGCRAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTT 2644721 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 ||||||||||| ||||| | ||| | || ||||||||||||||||| || || || Sbjct 2644720 CGCCTTGACGGCGTCGATCGAGTCGGAGCTCTCGACTTCCAAGGTGATGGTCTTGCCGGT 2644661 Query 68438 GAGGGTCTTGACGAATATCTGCAT 68461 | ||||||||| || || ||||| Sbjct 2644660 CAAGGTCTTGACAAAGATTTGCAT 2644637 Score = 89.7 bits (98), Expect = 9e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 ||||| ||||| || || || || ||||| || || || | || || || || || ||| Sbjct 2644534 TTTTGAATGTTGTAGTCAGACAGGGTCCTGCCGTCCTCGAGTTGTTTGCCAGCAAAGATG 2644475 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCT 68382 || | ||||||||||| |||||||| |||||||| |||||||| |||| Sbjct 2644474 AGGCGCTGTTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTTGGCCT 2644426 >seq2 Length=4543988 Score = 138 bits (152), Expect = 2e-27 Identities = 121/148 (82%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 68315 CTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAAT 68374 |||||| || ||||| || || | || |||||||| || ||||| |||||||| || || Sbjct 1346997 CTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGAT 1347056 Query 68375 CTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTTC 68433 ||| |||||||| || ||||| | ||| ||| ||||| ||||||||||||||||| || | Sbjct 1347057 CTTGGCCTTGACAGCGTCGATCGAGTC-GCTCGATTCGACTTCCAAGGTGATGGTCTTCC 1347115 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || | |||||||||||| |||||||| Sbjct 1347116 CAGTCAAGGTCTTGACGAAGATCTGCAT 1347143 Score = 86.0 bits (94), Expect = 1e-11 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || |||||||| || || || || ||||| || || || | |||||| |||||||| || Sbjct 1347249 TTCTGGATGTTGTAGTCAGACAGAGTCCTGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 1347308 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 | | || ||||| || || || || ||||| ||||||||||| |||| || |||| Sbjct 1347309 AAGCGCTGCTGGTCAGGGGGGATTCCCTCCTTATCTTGAATCTTGGCCTGTTCGCGCTCG 1347368 Query 68394 ATGGTGT 68400 |||| || Sbjct 1347369 ATGGCGT 1347375 >seq4 Length=3119897 Score = 113 bits (124), Expect = 8e-20 Identities = 656/1041 (63%), Gaps = 47/1041 (5%) Strand=Plus/Plus Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037 || |||||| | ||||||| | |||||| |||| || |||| || || |||||||| Sbjct 2514638 TAACGCCACAGCATGTACTCGAGCGGGGTCTTGTCGAGATGGTGGTCGATGTGGTGGAAG 2514697 Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTC 225097 || |||||||| ||||| | ||| || |||||| |||||||| || ||| || Sbjct 2514698 GCGTGCTGGGCAACGTAGCCGATGACCAAGTTGGGGTGCTTCCAGACTTCACCCTTGGTG 2514757 Query 225098 GGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCA 225157 || | | ||| | ||| | ||||| | || | |||||| | ||| |||||||| Sbjct 2514758 GGCTCGGTCTCAGCAACGAGCAGCTTGACCAAGGTCGACTTGCCGGAACCGTTGGGGCCG 2514817 Query 225158 ATCACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGT--------TGCTGAAGA 225209 | ||| | | ||||| || | | | ||| | | || | ||||| || Sbjct 2514818 AGGACGGCGACACGGGAAGAAAGGGAGATCTGGAGGGTGACATCGTACAGCTGCTG--GA 2514875 Query 225210 TCTCAGGGCCAGTTTGGTAAGCAAAGGCCACGCCACGCAGCTTCATGATGGCACGGTCCT 225269 || | | ||| |||| ||| | ||| ||||| ||| || | |||| Sbjct 2514876 CCTTGGAG---GTTGGGTATTGGAAGTCGACGTGACGCATCTTGGCGAGCGACTTCTCCT 2514932 Query 225270 TGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTCC- 225328 ||| | | ||| |||| || | || | |||||||| | || | | || | Sbjct 2514933 TGGTCTTGACACCTTCCAAGAGCGGCGGGTTGGGGAACTTGAAGGTGTACTCTTCGAGCG 2514992 Query 225329 --TTCAGGTCGTAGTAAGATGCAGCCTCGGGTCGCT--TTGCCACGAAAGCAGACAGGTT 225384 || || |||||||| | |||||||| || ||| ||||| || ||||| Sbjct 2514993 GGTTGAGCTCGTAGTAGGCCTTGGCCTCGGGCACCTGCTTG--ACGAAGGCCTCGAGGTT 2515050 Query 225385 TCCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACTGC 225444 ||| ||| | | ||| ||||| | ||| || | | || | | | || || Sbjct 2515051 GCCGCGGTACCGCTTGACCTTGAAGCGGTTCAAGT---GGAGGATATCGGTG-ACCGTGT 2515106 Query 225445 -GTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGA 225503 || |||||||| ||||||||||| || ||||| || | | | |||| | ||| Sbjct 2515107 TGTTGAGGAAGCCCGAGTCGTGGGAAACGATGATCGAGGTGCAGGTGGTCAAGGAGGTGA 2515166 Query 225504 GGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAA 225563 ||| || |||||| |||||| |||||||| ||||| || || ||||||| | Sbjct 2515167 GGTAGTCGACGAGCCACTGGACGTTGACGACGTCCAAATGGTTGGTGGGCTCGTCCAAGA 2515226 Query 225564 GCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCC 225623 ||||||| || || | | ||| | |||||| | || ||||||||| ||||| || | Sbjct 2515227 GCAGGATATCGGCCTTGAAGAGAACGGCGCGGACCAAAGCCAGCTTCATCTTCCAACCAC 2515286 Query 225624 CGGACAGGGAGCCGATTG-----AAACAGAGTGCTTAGCTTCGTCAAAGCCGTACT---C 225675 ||||||| |||||| | ||| | || | || || |||||| || | Sbjct 2515287 CGGACAGACCGCCGATGGGCTCCTCCCAGCGGGCCT--CTGCG---AAGCCGAGCTGGAC 2515341 Query 225676 CAGGAGCGTCTGGATAATGCGCTCGGGAGAGCTGCGAGCGGCAACGTTGGGGTCGGACGA 225735 || | | || || | | | |||| ||| ||| | | ||| | Sbjct 2515342 CAAGGTGGCCTTCAT-CTCCTCCTCGGAGGCCTGGATGCG----CTT----GTCTTGCTT 2515392 Query 225736 GAGGTAATCATATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACAC 225795 || | || | | | ||||| | | || ||||||||||||| || ||||| | Sbjct 2515393 GATCCACTCCAAAATGCCAATGTCGGCCTCGGAGCCGTCAATGTCGTGCTCGACGTAGAA 2515452 Query 225796 CGTCCGGAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAG 225855 || |||| || |||||||||||| | |||||| || || || || | Sbjct 2515453 AGTGCGGACGACGTCAGGGGAGGGGAAGCCCTCGACCTGGCCGTTATGGATGGCGCGCAT 2515512 Query 225856 CAGGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGAT 225915 ||||| |||||| | ||||||| | ||| |||||||| | | || ||||||| Sbjct 2515513 GAGGGTCGACTTGCCAGAGCCGTTGCGGCCGCAAAGGCCGTAGCGGTGGCCACGCTTGAG 2515572 Query 225916 GTTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATC 225975 | ||| | || ||| || | ||||||| | |||||||| | ||||| ||| | Sbjct 2515573 GCGGAGAGTGGCGGTGTTAAGCAAGATCTTGGCGCCATAGGCCAACGAGAAGGTGCAGTT 2515632 Query 225976 GCACAGGTCCTCACCCTCCTC 225996 ||| |||||||| |||||||| Sbjct 2515633 GCAGAGGTCCTCGCCCTCCTC 2515653 >seq6 Length=1769651 Score = 102 bits (112), Expect = 2e-16 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 268284 CATGGCCCCAATCGCGCTTTGCGTCCATGTTCCCGAGGAACAGGCATTTCTGCTTGCCGA 268343 ||||||||||||| ||||| ||||| | ||| |||||| | ||| | ||||||||| | Sbjct 545389 CATGGCCCCAATCACGCTTGGCGTCGAGGTTGCCGAGGTAGAGGGTCTCCTGCTTGCCCA 545448 Query 268344 -GCTTCACGCGTGCAAGACCGCGAGTGATTTTTCGGGTCACGAACGTCTCGCCACGTAGA 268402 ||| | || || | |||| | || || ||||| ||||| || |||||| | Sbjct 545449 AGCTGATCTCG-GCGACGGCGCGCGAAATCTTGCGGGTGACGAAAGTGCGGCCACGACGC 545507 Query 268403 GGGCTCTCGTGGTTGAAGAGGATGCCGTTGCACGCGAACATGCCATATGCCTCACGGTAG 268462 || |||||| ||||| ||||||||||||| || ||| || || | ||| |||||| Sbjct 545508 GGCGACTCGTGATTGAACAGGATGCCGTTGCTGGCATGCATACCGTAGGACTCGCGGTAG 545567 Query 268463 TTCACGACCGTCCAG 268477 ||| ||| ||||| Sbjct 545568 TTCTTGACAATCCAG 545582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921622181114680