Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidiopsis_20lactophilus_20[genbank_20GCA_5F001599975.1_202016 -03-01] 19 sequences; 22,180,604 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1 201 2e-46 seq5 127 4e-24 >seq1 Length=5326569 Score = 201 bits (222), Expect = 2e-46 Identities = 207/265 (78%), Gaps = 7/265 (3%) Strand=Plus/Minus Query 42744 GGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA-GGTGTCGATGCCCGGACTCACCTT 42802 ||| ||||||| |||||||||||||||||| || || || |||||||| |||||||| Sbjct 653956 GGCTCCTTCGCTTCCATCTTCTGGCTCAAGAAGCGCGGCCTC-ATGCCCGGCCTCACCTT 653898 Query 42803 CTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTT 42862 ||| ||||| |||||| | | |||||||| ||||| | ||||||||||||||||| || Sbjct 653897 CTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACACCGACTTTGCCTGCCTCCTCTT 653838 Query 42863 CTCGAGCCACCTCAGGC-ACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGG 42921 ||| |||||||| || | | ||| | | || ||| |||||||||| ||||| Sbjct 653837 CTC---CCACCTCAAGCGCCGACCCCACCCA-GACACCGTCAAGGCCATCATCGAGGAGG 653782 Query 42922 CCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGA 42981 |||| ||||| |||||||||||||| || | | |||||||| ||||| ||||||||| Sbjct 653781 CCGTCGAGATTGAGAAGGAGTTCCTTACCGACGCCCTGCCCGTCTCCCTCATCGGCATGA 653722 Query 42982 ACCACGACCTCATGTGCAAGTACAT 43006 || | ||||||| || ||||||| Sbjct 653721 ACGCCACCCTCATGCGCCAGTACAT 653697 Score = 147 bits (162), Expect = 4e-30 Identities = 162/213 (76%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 42534 ATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCC 42593 || || ||| | ||||||||||| ||| || || || | || ||| | | || ||| Sbjct 654223 ATGGAAAACATCCACTCTGAGGTCTACTCCCTCTTGATCGATACCTACGTGCGCGACCCC 654164 Query 42594 GTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCG 42653 || |||| ||| || ||||| | || ||||| || || ||||||||||||||||| Sbjct 654163 ATCCAGCGCAACAACCTCTTCAACTCGATCGAGACCATCCCGTGCATCAAGAAGAAGGCC 654104 Query 42654 GACTGGGCGCTCAACTGGATCGAGAGTC-CCGACGCAACGTTCGGCGAGAGGCTGGTAGC 42712 |||||||| ||||||||||||| | | | ||||| || || |||||| | || || || Sbjct 654103 GACTGGGCCCTCAACTGGATCG-GCGACAAGGACGCCACTTTTGGCGAGCGCCTCGTCGC 654045 Query 42713 CTTTACCGCCGTCGAGGGCATCTTCTTCTCGGG 42745 ||| ||||||||||||||||||||||||| || Sbjct 654044 CTTCGCCGCCGTCGAGGGCATCTTCTTCTCCGG 654012 Score = 147 bits (162), Expect = 4e-30 Identities = 315/455 (69%), Gaps = 23/455 (5%) Strand=Plus/Minus Query 244148 GGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGAC 244207 ||||||| || ||| ||||||||| ||||| | || ||| ||||||||||||| Sbjct 1975234 GGCTCGAAGCACTCGTTGTTGCCCAAGATCTGGGAGGTCGACGCGGTCGGCATGGGCGCA 1975175 Query 244208 ACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAG--- 244264 |||| || ||||| | || |||| | | |||| ||| ||| || | Sbjct 1975174 ACCAACAAGCTGTTGCGCAGGCCGC-CGGC--GATGA----TCTT--CTCCTTGAGGCTA 1975124 Query 244265 TCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCA-GCCC 244323 |||||| ||| | ||| | | | | || |||||||||||| ||||| ||| |||| Sbjct 1975123 TCCCACT--CCCAAAGGGTGGTAGGGGT-GACGCCCCACATGTCGAACTGAAGCTCGCCC 1975067 Query 244324 CTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCG-CGCTGGGCCAGCTTAC 244382 || | | | |||||||||| | |||| | ||| || || || || ||| | |||| Sbjct 1975066 CTGGACG-CTGGGCTGCCCTGGAAGGTTGAGTAAGGGCCCTCTTCGATGG-CGAGCTCGT 1975009 Query 244383 AGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGG 244442 | | | ||||| ||||||| ||||||||||||| |||| |||||||| | |||| Sbjct 1975008 TGGACACCTCGAGAGCGGCGTGGTAGATGGTCTCGTGGATCTGCTTGTTCAGGAGACGGG 1974949 Query 244443 CCTTGCCGCAG-GTGAAGGGG-ATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCAC 244500 | || | || || || || |||| || | |||||| ||||||| || || || || Sbjct 1974948 CG--GCGGGAGAGTCAAAAGGCATGCGCAGCGCCATGAACGCGTCGGCGAGACCTTGAAC 1974891 Query 244501 GCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAA 244560 || | ||||||||||| ||| ||| |||| ||| | |||| || | || ||||| | Sbjct 1974890 ACCAACGCCGATGGGTCGGTGCCGCATGTTCGAGTTCTTGGCCTCTTGAACAGGGTAGTA 1974831 Query 244561 GTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGA 244595 |||| | ||||| | ||| | ||||||||||| Sbjct 1974830 GTTGACATCGATAATGCGGTTCAAGTTGCGGGTGA 1974796 Score = 100 bits (110), Expect = 5e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 245116 CCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACC-A 245174 ||| ||||| | ||||| |||| || ||||| ||||||||||| || ||||| || | Sbjct 1974122 CCATGGCTCGAGGTAGATGGCGAAAGCACCGGGGCGCTTGTTGCCACCTTGGTCAACGTA 1974063 Query 245175 TCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGG 245234 | || | |||||| | ||| || | ||||| | |||||| |||| |||||||| Sbjct 1974062 GCGGGCCGTGTT-GTTGAACACGCGGAGCATGGGCACGACGCCGTTCGAGTAGCCGTTGG 1974004 Query 245235 TGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGG 245294 |||| |||||||| ||| || | | || |||| |||| | ||| | || || | Sbjct 1974003 TGCCGCCGATGTAGGAGCCAGTGGCGCGGATGTTGTGGATGTGGAGGCCAATGCCACCAG 1973944 Query 245295 CGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGT 245328 | ||||||||| |||||||| |||| | ||| Sbjct 1973943 CCGTCTTGGAGATCTGGGCGCAGGTCTTCAAGGT 1973910 Score = 95.1 bits (104), Expect = 2e-14 Identities = 179/260 (69%), Gaps = 4/260 (2%) Strand=Plus/Minus Query 244792 GTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGAC 244851 |||| || ||||||| |||||||||||||| |||||||||| |||||| | |||| Sbjct 1974506 GTTGGCGGAGTCCTTGAAGAGCATGAAGGGCATGCCGGTCTCGATCTGGGCCTCCAGGAT 1974447 Query 244852 GCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCG 244911 | || |||||| | | |||||||| | ||| || ||| || |||||| Sbjct 1974446 GGCGTACCAGAGCTTCTGGGCCTTGACGACGCGGCGCGCTCGGCCTTCCTTCTCGTACTT 1974387 Query 244912 GGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCC-GGGGC-ACGACGCC 244969 | ||||||| ||| ||| ||| |||| ||| | | ||| ||||| || ||| Sbjct 1974386 TTCGAACAGGGCGTCGTGCTCCTCGCCATAGACGTCGGCCAAGCCAGGGGCTTCG--GCC 1974329 Query 244970 GGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATC 245029 ||||| | | ||| || || | ||| ||| | ||||||| | ||| | |||| Sbjct 1974328 GGGCAGAACAAGGGCCAGTCAGCGTTGGCCTCGACGCGGCGCATGAACATGTCCGAGATC 1974269 Query 245030 CAGAGGGCCTGGAAGAGGTC 245049 |||||||| | ||||||||| Sbjct 1974268 CAGAGGGCGTAGAAGAGGTC 1974249 Score = 86.0 bits (94), Expect = 1e-11 Identities = 87/112 (78%), Gaps = 1/112 (1%) Strand=Plus/Minus Query 245336 ATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTG 245395 ||||| || ||| |||| ||||||| || || ||||| || ||||||||||| | | Sbjct 1973838 ATGCCATCGATGGAGTCCTCCTTCATGGCGACCAAGAAGCAAGACGACAGCTGGGGATGG 1973779 Query 245396 GGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCG 245447 || ||| | ||||||||||||||| ||||||||| ||||||| ||||| Sbjct 1973778 GGAGTGCCGGCGTTGAACAGAGTGGGCGAGGCGTGGGTGAAGTAGC-GCTCG 1973728 >seq5 Length=3070904 Score = 127 bits (140), Expect = 4e-24 Identities = 148/199 (74%), Gaps = 3/199 (2%) Strand=Plus/Plus Query 42750 TTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAAC 42809 ||||| || || |||||||||||| || | | ||||| || || |||||||| ||| Sbjct 1666793 TTCGCGTCAATATTCTGGCTCAAGAAGCGCGGTTTAATGCCGGGCCTGACCTTCTCCAAC 1666852 Query 42810 GAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGC 42869 || |||||| | | ||||| || ||||| | |||||||||||||| || ||||| | Sbjct 1666853 GAGCTCATCTCCCGCGACGAAGGCCTGCACACCGACTTTGCCTGCCTGCTCTTCTC---C 1666909 Query 42870 CACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAG 42929 ||||| ||||||||||||| | || || || |||||||| | || || ||| Sbjct 1666910 CACCTGGAGCACAAGCCCTCGCAAGACCGCATCTACTCCATCATCTCCTCCGCTGTCGAG 1666969 Query 42930 ATCGAGAAGGAGTTCCTCA 42948 ||||||||||| || |||| Sbjct 1666970 ATCGAGAAGGACTTTCTCA 1666988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338975719440