Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidiopsis_20lactophilus_20[genbank_20GCA_5F001599975.1_202016 -03-01] 19 sequences; 22,180,604 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq2 132 5e-26 seq1 104 3e-17 >seq2 Length=4543988 Score = 132 bits (146), Expect = 5e-26 Identities = 123/154 (80%), Gaps = 4/154 (3%) Strand=Plus/Plus Query 46442 TCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCC 46501 |||||||||||||| ||||| |||| |||||||||||||| ||| | || |||||||||| Sbjct 1346992 TCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 1347051 Query 46502 ATGATCTTCTTCTTG--AGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGG 46559 |||||| |||| ||||||| | || |||||||||||| || |||| ||||||| Sbjct 1347052 TGGATCTTGGCCTTGACAGCGTCG--ATCGAGTCGCTCGATTCGACTTCCAAGGTGATGG 1347109 Query 46560 TTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || || |||| || || || ||||| ||||| Sbjct 1347110 TCTTCCCAGTCAAGGTCTTGACGAAGATCTGCAT 1347143 Score = 104 bits (114), Expect = 3e-17 Identities = 81/97 (84%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||||||||| | || || |||| |||||||||||||||||||| | Sbjct 1345909 CCTTCTGGATGTTGTAGTCGGACAAGGTCCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 1345968 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 |||||||||||||||| | || | || ||||||||| Sbjct 1345969 TCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 1346005 Score = 95.1 bits (104), Expect = 1e-14 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| |||||||| || ||||| | |||| |||||||||||||||||||| | Sbjct 1347247 CCTTCTGGATGTTGTAGTCAGACAGAGTCCTGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 1347306 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 |||||||||||||||| | || | | |||||| || Sbjct 1347307 TCAAGCGCTGCTGGTCAGGGGGGATTCCCTCCTTATC 1347343 >seq1 Length=5326569 Score = 104 bits (114), Expect = 3e-17 Identities = 114/149 (77%), Gaps = 10/149 (7%) Strand=Plus/Minus Query 46450 CTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTT 46509 ||| || || || |||| |||||||||||||| ||| | || |||||||||| |||||| Sbjct 2644780 CTTTCCAGCRAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTT 2644721 Query 46510 CTTCTTGA--GCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTG 46564 | ||||| |||||| | || ||| |||| || || |||| |||||||| ||| Sbjct 2644720 CGCCTTGACGGCGTCG--ATCGAGTCGGAGCTC---TCGACTTCCAAGGTGATGGTCTTG 2644666 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| || || |||||||||||||| Sbjct 2644665 CCGGTCAAGGTCTTGACAAAGATTTGCAT 2644637 Score = 100 bits (110), Expect = 3e-16 Identities = 128/173 (74%), Gaps = 10/173 (6%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||||||||| || || | | || || | ||||||||| || || | Sbjct 2645576 CCTTCTGGATGTTGTAGTCGGACAGGGTCCTGCCATCCTCCAACTGCTTGCCAGCAAAGA 2645517 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGA--GCGT 46521 ||| ||| |||||||| | || | || |||||||||| ||||||| ||||| |||| Sbjct 2645516 TCAGGCGTTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGGCGT 2645457 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCA 46571 || | || ||| |||| || || |||| |||||||| ||||| |||| Sbjct 2645456 CG--ATCGAGTCGGAGCTC---TCGACCTCCAAGGTGATGGTCTTGCCGGTCA 2645409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565238265755880