Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidiopsis_20lactophilus_20[genbank_20GCA_5F001599975.1_202016 -03-01] 19 sequences; 22,180,604 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1 150 3e-31 seq5 105 1e-17 >seq1 Length=5326569 Score = 150 bits (166), Expect = 3e-31 Identities = 186/252 (74%), Gaps = 3/252 (1%) Strand=Plus/Plus Query 47989 CATGAGGGTGATGTTCATGCCTATGAGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTT 48048 |||||||||| ||||||||| |||||||| ||||||| || | || || |||||||| Sbjct 653708 CATGAGGGTGGCGTTCATGCCGATGAGGGAGACGGGCAGGGCGTCGGTAAGGAACTCCTT 653767 Query 48049 CTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCG 48108 ||| |||| ||||| ||| | | || ||| ||| | | || | ||| | | ||| Sbjct 653768 CTCAATCTCGACGGCCTCCTCGATGATGGCCTTGACG-GTGTCTGGGTGGGGTCG--GCG 653824 Query 48109 CAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGAT 48168 | | | | || |||| | |||||||||||| |||||| ||| ||||| ||| ||| Sbjct 653825 CTTGAGGTGGGAGAAGAGGAGGCAGGCAAAGTCGGTGTGCAGGCCCTCGTCGCGGGAGAT 653884 Query 48169 GAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGC 48228 |||| ||||||||||| ||| || ||||||| || | || ||||||||||| || | Sbjct 653885 GAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA 653944 Query 48229 CGCGAAAGAGCC 48240 ||||| ||||| Sbjct 653945 AGCGAAGGAGCC 653956 Score = 114 bits (126), Expect = 2e-20 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 48239 CCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCG 48298 || ||||||||||||||||| || || ||||| ||| ||| | ||| || |||| ||| Sbjct 654012 CCGGAGAAGAAGATGCCCTCGACGGCGGCGAAGGCGACGAGGCGCTCGCCAAAAGTGGCG 654071 Query 48299 TTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTC 48358 | |||||| ||||||| || |||||||| ||||||||||||||||| || || ||| Sbjct 654072 TCCTTGTCGCCGATCCAGTTGAGGGCCCAGTCGGCCTTCTTCTTGATGCACGGGATGGTC 654131 Query 48359 TCTATGGCCCGGAAGAGCTTCTTGCACT 48386 || || | |||||| || |||| || Sbjct 654132 TCGATCGAGTTGAAGAGGTTGTTGCGCT 654159 Score = 98.7 bits (108), Expect = 2e-15 Identities = 109/143 (76%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 213454 CGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCA 213513 ||||| | || |||| || || | |||||||||||| |||| |||||| ||||| | Sbjct 1974709 CGTAGGCGCCATCCTTGACGAAGGCGGGCAGGGCGATGGAAGCCAAGTTGCAGACGGCAA 1974650 Query 213514 CCTCCT-GAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTG 213572 |||| | | ||| | | |||||| |||||||||||||||| |||| | | ||||||| Sbjct 1974649 CCTCGTCGGGAGCC-GAGTACTCGATGATCTCGGTGCACAAGTTGGAGGACTTGATGGTG 1974591 Query 213573 CCCAGGTTCTGGTGGTTTGACTT 213595 |||| ||||| ||||| || || Sbjct 1974590 CCCAAGTTCTTCTGGTTAGATTT 1974568 >seq5 Length=3070904 Score = 105 bits (116), Expect = 1e-17 Identities = 94/118 (80%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 48123 AGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGA 48182 |||||| |||||||||||| |||||| ||||||||| ||| ||||||| ||||||||| Sbjct 1666904 AGAGCAGGCAGGCAAAGTCGGTGTGCAGGCCTTCGTCGCGGGAGATGAGCTCGTTGGAGA 1666845 Query 48183 AGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCC 48240 || || || ||||| | || | || ||||||||||| |||| |||||| || || Sbjct 1666844 AGGTCAGGCCCGGCATTAAACCGCGCTTCTTGAGCCAGAATATTGACGCGAATGAACC 1666787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532578760960