Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidiopsis_20lactophilus_20[genbank_20GCA_5F001599975.1_202016 -03-01] 19 sequences; 22,180,604 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq5 132 6e-25 seq1 125 9e-23 seq4 98.7 1e-14 seq3 93.3 5e-13 seq2 89.7 6e-12 >seq5 Length=3070904 Score = 132 bits (146), Expect = 6e-25 Identities = 187/263 (71%), Gaps = 0/263 (0%) Strand=Plus/Minus Query 869656 CTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGGACCTCCTTCATGAACCGGCCGGC 869715 |||||| || |||||| ||| |||||||| |||| ||||| || |||||| || Sbjct 1666378 CTGGAAACCATAAAAGCACCTGGCCTCTGCCGCTTGCACCTCGTTTGAGAACCGCTCGAT 1666319 Query 869716 CAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAAAAAGCCAGGACGTGCTTGATAAA 869775 |||||||||| |||| ||||||| || |||||| || || |||||||| |||| || Sbjct 1666318 CAGGTTCTCGTTGACGACGCCGTCGGCGGAGGCGAAGAAGGCGAGGACGTGGATGATGAA 1666259 Query 869776 GTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACGGTGTCGGCGCTGAGGTCCACCTC 869835 |||||||||| || || ||||| ||| | || |||| || || | ||| Sbjct 1666258 GTGGCGCTCGCCGGCGGTGAGCTTTTGGAAGTCGGCGAGGTCGTGTGACAGATCGATCTC 1666199 Query 869836 CTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACATCTCCCATACTTGCTGGTAGCG 869895 ||| || ||||||| |||||| |||| | ||||| | ||| | | ||||| Sbjct 1666198 CTCCGCCGTCCAGAAGGAGGCCATGGCCGTCTTGTAGAAGCGCCAGATGGACGGGTAGGT 1666139 Query 869896 GATAGGGAAGAGGACAAAGCGGT 869918 ||| |||||||| || ||||||| Sbjct 1666138 GATGGGGAAGAGCACGAAGCGGT 1666116 >seq1 Length=5326569 Score = 125 bits (138), Expect = 9e-23 Identities = 119/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 ||||| |||||||| ||||||| ||| || ||||||||||||||||||| |||||| || Sbjct 1974073 TGGTCAACGTAGCGGGCCGTGTTGTTGAACACGCGGAGCATGGGCACGACGCCGTTCGAG 1974014 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 | |||||||||||| | | ||||| ||| | |||||| | ||||| | | ||| Sbjct 1974013 TAGCCGTTGGTGCCGCCGATGTAGGAGCCAGTGGCGCGGATGTTGTGGATGTGGAGGCCA 1973954 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCA 1630217 ||||| || |||| ||||||||| | ||||| Sbjct 1973953 ATGCCACCAGCCGTCTTGGAGATCTGGGCGCA 1973922 Score = 102 bits (112), Expect = 1e-15 Identities = 136/187 (73%), Gaps = 8/187 (4%) Strand=Plus/Plus Query 1574004 GGCGTCGACGTCGTGCGCAAGATCATCAAGCACCACGC-CTCCAAGAGGA---TCGACCT 1574059 ||| | |||||||| ||||| ||||||| ||| |||| ||| | || ||| Sbjct 4523198 GGCATTGACGTCGTTCGCAACCGCATCAAG----ACGTTCTCCCAGAAAAAAGTCACCCT 4523253 Query 1574060 GCCGCCCGGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGC 1574119 ||| ||| ||||||||| | |||||||||||||||||||||| | | ||| | | || Sbjct 4523254 GCCCGTCGGCCGCCACAAGATCATCATCCTCGACGAGGCCGACTCCATGACGCCCGGTGC 4523313 Query 1574120 CCAGCAGGCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGC 1574179 |||||| ||||| || ||||||||| | | ||||||| || ||||| | | || Sbjct 4523314 CCAGCAAGCCCTCCGTCGCACCATGGAGATCTATTCCAACACCACCCGCTTCTGCTTTGC 4523373 Query 1574180 GTGCAAC 1574186 ||||||| Sbjct 4523374 GTGCAAC 4523380 Score = 96.9 bits (106), Expect = 4e-14 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 868835 ATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACCGGCAGCGACTCGCTC 868894 |||||||||| ||||||| |||||||||||||||||| | || ||||| | ||| | Sbjct 653697 ATGTACTGGCGCATGAGGGTGGCGTTCATGCCGATGAGGGAGACGGGCAGGGCGTCGGTA 653756 Query 868895 ACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGAT 868932 | ||||| ||||| |||||||||||||| ||||||| Sbjct 653757 AGGAACTCCTTCTCAATCTCGACGGCCTCCTCGATGAT 653794 Score = 95.1 bits (104), Expect = 1e-13 Identities = 138/195 (71%), Gaps = 9/195 (5%) Strand=Plus/Plus Query 869267 CCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCG 869326 || ||||| |||||||||||||||||||| ||| ||| ||| |||||| |||| ||| || Sbjct 654012 CCGGAGAAGAAGATGCCCTCGACGGCGGCGAAGGCGACGAGGCGCTCGCCAAAAGTGGCG 654071 Query 869327 AGGCCCTCCTTGT---TGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGC 869383 ||||||| |||||| || | |||||||||||||| ||| | | |||| Sbjct 654072 ------TCCTTGTCGCCGATCCAGTTGAGGGCCCAGTCGGCCTTCTTCTTGATGCACGGG 654125 Query 869384 ACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCG 869443 | || ||||| | | ||||||| || | | ||||| || ||||| ||| Sbjct 654126 ATGGTCTCGATCGAGTTGAAGAGGTTGTTGCGCTGGATGGGGTCGCGCACGTAGGTATCG 654185 Query 869444 ATCAGGAGCGAATAG 869458 |||| ||| || ||| Sbjct 654186 ATCAAGAGGGAGTAG 654200 Score = 95.1 bits (104), Expect = 1e-13 Identities = 151/210 (72%), Gaps = 9/210 (4%) Strand=Plus/Plus Query 733034 CGGCGACG-GCGCCAACGCCGTCAAGATCGTGACGCGCGCCATGCGCCAGCCCGAGTTGG 733092 |||||||| ||| ||| ||||||||| ||| | || | ||| ||| || | | Sbjct 1396741 CGGCGACGAGCGGCAAGATGGTCAAGATCCGGACCAGAGCGACCCGCATTCCCCAGGTCG 1396800 Query 733093 GCGACAAACTGTCGTCGCGCCACGGCCAAAAGGGCACCGTGGGCAGCGTGCGCTCCACCG 733152 ||||||| | |||| || ||||| ||||||||||| || |||| | | || || Sbjct 1396801 GCGACAAGTTTGCGTCTCGTCACGGTCAAAAGGGCACAGTCGGCATCA--CCTACCGCCA 1396858 Query 733153 AG--GACATGCCCTGGTCGCCGCGCGGCGGCGCCACGCCCGACATCGTGATCAACCCGCA 733210 || |||||||| | || | | | |||| |||||||||||| | |||||||| || Sbjct 1396859 AGAAGACATGCCGT--TCACTGTT-GACGGCCTAACGCCCGACATCATCATCAACCCTCA 1396915 Query 733211 CGCCATCCCGTCGCGCATGACCAT-GGGCA 733239 |||||| ||||| || |||||||| ||||| Sbjct 1396916 CGCCATTCCGTCTCGAATGACCATCGGGCA 1396945 >seq4 Length=3119897 Score = 98.7 bits (108), Expect = 1e-14 Identities = 170/241 (71%), Gaps = 11/241 (5%) Strand=Plus/Minus Query 733077 CGCCAGCCCGAGTTGGGCGACAAACTGTCGTCGCGCCACGGCCAAAAGGGCACCGTGGGC 733136 ||||| |||||| | |||||||| | ||||||||||| || ||||| | ||| Sbjct 2564435 CGCCAACCCGAGCTCGGCGACAAGTTCAGCTCGCGCCACGGGCAGAAGGGTGTCTGCGGC 2564376 Query 733137 ---AGCGTGCGCTCCACCGAGGACATGCCCTGGTCGCCGCGCGGCGGCGCCACGCCCGAC 733193 | ||||| ||| | ||||||||||||| ||| || |||| || || ||| Sbjct 2564375 TTGATCGTGC-CTCAA--GAGGACATGCCCTTCTCGGA---CGACGGCATCAACCCAGAC 2564322 Query 733194 ATCGTGATCAACCCGCACGCCATCCCGTCGCGCATGACCATGGGCAAGATGCTCGAGGCC 733253 ||| | || |||||||||| | ||||||| || |||||| ||||||||||| | ||| Sbjct 2564321 ATCATCATGAACCCGCACGGCTTCCCGTCCCGAATGACCGTGGGCAAGATGATGGAGTTG 2564262 Query 733254 CTCCTGGGCAAGG-TGGCCTGCCGCGAGGGCTACATCGGCGACGGCACGCCCTTTGGCGG 733312 ||| ||||||| |||| || | ||||| | | | ||||||| | || ||||| Sbjct 2564261 CTCTCTGGCAAGGCTGGCTTGGTG-AAGGGCAAGTTTGAGTACGGCACAGCTTTCGGCGG 2564203 Query 733313 C 733313 | Sbjct 2564202 C 2564202 >seq3 Length=3806995 Score = 93.3 bits (102), Expect = 5e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 19053 ATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCCGTGC 19112 |||||||| ||| || |||||| ||| || ||| || || |||||||||||| Sbjct 1483536 ATCGGCGGTGTGGTCACCTGCGTGATTCGGAATCCGCCAGCTGGGCTCGGCGAGCCGGTT 1483595 Query 19113 TTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGGA 19172 || ||||| | ||||| ||| || ||||||||||| || | || |||||||| ||| Sbjct 1483596 TTCGACAAATTGGAGGCTAAGCTTGCGCACGCCATGCTCTCCCTGCCCGCCACCAAAGGA 1483655 Query 19173 TTCGAGATTGGCAGCGGGTTT 19193 || || || |||||||| ||| Sbjct 1483656 TTTGAAATCGGCAGCGGCTTT 1483676 >seq2 Length=4543988 Score = 89.7 bits (98), Expect = 6e-12 Identities = 178/264 (67%), Gaps = 0/264 (0%) Strand=Plus/Minus Query 507026 GCCACCTACCACAACAACGACATTCGCGGCCAGAAGCAGTCGACCCAGCGCTCGGGCAAG 507085 ||||||||| ||||| |||| |||||| |||| | | || || ||| | Sbjct 3532970 GCCACCTACATGGACAACTCGATTCCGGGCCAGCCGCAGGCCATGCAAAAGTCTGGCCGG 3532911 Query 507086 CCCACCAAGGGCCTCGTGGAGCGGTTCAAGGGCAAGGAGGGTAGGATCCGCGGCAATTGC 507145 || | |||| | || | ||| | || |||||||| || ||| | || ||||| | Sbjct 3532910 CCGATCAAGTCCATCCGAGCCCGGCTAAAAGGCAAGGAAGGAAGGCTGCGAGGCAACTTG 3532851 Query 507146 ATGGGCAAGCGCGTCAACTTTACCGCGCGCGCCGTCATCAGCCCCGACCCCGAGATCGAC 507205 ||||||||||||||| |||| |||| || | ||||||| | ||||||| | ||||| Sbjct 3532850 ATGGGCAAGCGCGTCGACTTCTCCGCCCGAACGGTCATCACCGGCGACCCCAACATCGAT 3532791 Query 507206 ATTGACGAGGTGGGCGTGCCCTATGAGATCGTCAAGACGCTCACCTTTCCCGAGCGCGTG 507265 | ||| | || || || ||| | |||| | | || |||| || ||||| ||| Sbjct 3532790 CTCGACCAAGTCGGTGTCCCCAAGTCCATCGCCCGCAACCTGACCTACCCGGAGCGGGTG 3532731 Query 507266 ACGCCCCTTACCATGGGCGACCTC 507289 |||||| | ||| | || |||| Sbjct 3532730 ACGCCCTACAACATTGCCGCCCTC 3532707 Score = 86.0 bits (94), Expect = 8e-11 Identities = 166/243 (68%), Gaps = 4/243 (2%) Strand=Plus/Minus Query 512000 GTGCTGGGCATCGAGGCCGCCGTGGCCGTGCTCTTTTCCGAGATCAAGGCC--GTCATCT 512057 |||||||||||||| |||| | ||| |||| | || || | ||| |||||| Sbjct 3529566 GTGCTGGGCATCGAAGCCGGCCGAGCCT--CTCTGCTGCGCGAACTGCGCCAGGTCATCG 3529509 Query 512058 CCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACACCATGTGCT 512117 ||||| ||| | ||||||||| |||| || | || || |||| ||| || Sbjct 3529508 AGTTTGATGGCTCGTACGTCAACTACCGACATCTGGCTCTTTTGTGCGACCTGATGACCT 3529449 Query 512118 GCCGCGGATCGGTGGTGGCCGTCACGCGCCACGGCTTCAACCGCGCCGACCACGGCTTCC 512177 ||||| | || ||||| |||||||||||||| ||||||| || ||| ||| | Sbjct 3529448 CGCGCGGCACTTTGATGGCCATCACGCGCCACGGCATCAACCGAGCTGACACTGGCGCTC 3529389 Query 512178 TGTCGCGGGCCTCTTTCGAAGAGACCGTCGACATCCTCTTTGACGCGGCGGCCTTTGCCG 512237 | ||| ||| ||||||||||||||||| || | | || || || || ||| || Sbjct 3529388 TCATGCGTTGCTCGTTCGAAGAGACCGTCGAGATTTTGATGGAGGCAGCTTCCATTGGCG 3529329 Query 512238 AGA 512240 ||| Sbjct 3529328 AGA 3529326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107137640771023