Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidiopsis_20lactophilus_20[genbank_20GCA_5F001599975.1_202016 -03-01] 19 sequences; 22,180,604 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq5 127 3e-23 seq1 127 3e-23 seq4 102 1e-15 >seq5 Length=3070904 Score = 127 bits (140), Expect = 3e-23 Identities = 197/279 (71%), Gaps = 2/279 (1%) Strand=Plus/Minus Query 796140 AAAACACCTGGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGC 796199 ||| ||||||||||| | |||| ||||| || ||| || || ||||||||| Sbjct 1666366 AAAGCACCTGGCCTCTGCCGCTTGCACCTCGTTTGAGAACCGCTCGATCAGGTTCTCGTT 1666307 Query 796200 CACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTC 796259 |||| ||||||| || |||||| |||||||||||||| |||| ||||| |||||| | Sbjct 1666306 GACGACGCCGTCGGCGGAGGCGAAGAAGGCGAGGACGTGGATGATGAAGTGGCGCTCGCC 1666247 Query 796260 GTCGCTGAGCGAGACCCAGTGGACCGTGTCG-GCGCCGAGGTCGACCTCCTCGGCGGTCC 796318 | || ||||| ||| | | |||| | | | || |||| |||||| || |||| Sbjct 1666246 GGCGGTGAGCTTTTGGAAGTCGGCGAGGTCGTGTGAC-AGATCGATCTCCTCCGCCGTCC 1666188 Query 796319 AAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 | ||||||||| |||| | ||||| | ||| || ||||| ||||||||| | Sbjct 1666187 AGAAGGAGGCCATGGCCGTCTTGTAGAAGCGCCAGATGGACGGGTAGGTGATGGGGAAGA 1666128 Query 796379 GAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTCGC 796417 | || ||||| | || ||| | ||||| ||||||| Sbjct 1666127 GCACGAAGCGGTCCGGCGCCTCTTGCAGCAGAGGCTCGC 1666089 >seq1 Length=5326569 Score = 127 bits (140), Expect = 3e-23 Identities = 163/224 (73%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 794428 CCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCC 794487 || ||||| |||||||||||||||||||| ||| ||||||| |||||| |||||||| | Sbjct 654012 CCGGAGAAGAAGATGCCCTCGACGGCGGCGAAGGCGACGAGGCGCTCGCCAAAAGTGGC- 654070 Query 794488 AGGCCCTCTTTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACC 794547 | ||| | | |||||| || | ||||| || ||||| ||| | | | || | Sbjct 654071 --GTCCTTGTCGCCGATCCAGTTGAGGGCCCAGTCGGCCTTCTTCTTGATGCACGGGATG 654128 Query 794548 GTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATG 794607 || ||||| | | ||||||| || || || ||||| |||||||| ||||| Sbjct 654129 GTCTCGATCGAGTTGAAGAGGTTGTTGCGCTGGATGGGGTCGCGCACGTAGGTATCGATC 654188 Query 794608 AGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTG 794651 | ||| |||||| ||| |||||||||||||| || |||||| Sbjct 654189 AAGAGGGAGTAGACCTCAGAGTGGATGTTTTCCATCATGATCTG 654232 Score = 120 bits (132), Expect = 5e-21 Identities = 126/166 (76%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 ||||| || ||||| ||||||| ||| || ||||||||||||||||| | |||||| || Sbjct 1974073 TGGTCAACGTAGCGGGCCGTGTTGTTGAACACGCGGAGCATGGGCACGACGCCGTTCGAG 1974014 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 | |||||||||||| | | ||||| ||| | |||||| | ||||| | | ||| Sbjct 1974013 TAGCCGTTGGTGCCGCCGATGTAGGAGCCAGTGGCGCGGATGTTGTGGATGTGGAGGCCA 1973954 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCT 2073706 ||||| || |||| ||||||||| | ||||| | |||| |||| Sbjct 1973953 ATGCCACCAGCCGTCTTGGAGATCTGGGCGCAGGTCTTCAAGGTCT 1973908 Score = 104 bits (114), Expect = 4e-16 Identities = 84/101 (83%), Gaps = 3/101 (3%) Strand=Plus/Plus Query 794041 CAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCGACTCGC 794100 |||||||||||| |||||||| |||||||||||||||||| | |||||||| | ||| Sbjct 653695 CAATGTACTGGCGCATGAGGGTGGCGTTCATGCCGATGAGGGAGACGGGCAGGGCGTCGG 653754 Query 794101 TGACAAACTCTTTCTCGATCTCGACGG---CCTCGATGATG 794138 | | ||||| ||||| |||||||||| ||||||||||| Sbjct 653755 TAAGGAACTCCTTCTCAATCTCGACGGCCTCCTCGATGATG 653795 Score = 96.9 bits (106), Expect = 5e-14 Identities = 111/144 (77%), Gaps = 4/144 (3%) Strand=Plus/Plus Query 2019182 GAAAAGAATCGACCTGCCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTG 2019241 ||||| | || |||||| ||||||||||||| | ||||||||||| |||||||||| Sbjct 4523239 GAAAAAAGTCACCCTGCCCGTCGGCCGCCACAAGATCATCATCCTCGACGAGGCCGACTC 4523298 Query 2019242 CCTTACGTCGGCGGCCCAGCAGGCCCTCCGATCG-ACCATGGAAAAGTACACCAACACGA 2019300 | | ||| | | |||||||| |||||||| ||| |||||||| | || ||||||| | Sbjct 4523299 CATGACGCCCGGTGCCCAGCAAGCCCTCCG-TCGCACCATGGAGATCTATTCCAACACCA 4523357 Query 2019301 CGCGGTT-TGCGCTGGCCTGCAAC 2019323 | || || ||| | || |||||| Sbjct 4523358 CCCGCTTCTGC-TTTGCGTGCAAC 4523380 Score = 93.3 bits (102), Expect = 7e-13 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 2071800 CAGGCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCG 2071859 || ||| || || |||| |||||| || | | |||||| || | | | |||||||| Sbjct 1974347 CAAGCCAGGGGCTTCGGCCGGGCAGAACAAGGGCCAGTCAGCGTTGGCCTCGACGCGGCG 1974288 Query 2071860 CATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTT 2071919 ||| |||| ||| | |||| ||| |||| ||||| || || || || |||||||| Sbjct 1974287 CATGAACATGTCCGAGATCCAGAGGGCGTAGAAGAGGTCACGAGCGCGAACTTCCTCCTT 1974228 Query 2071920 GCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGC 2071965 |||||||||||| || ||| | | |||| || |||||||||| Sbjct 1974227 GCCGTGGTTCTTGCGCAAGTCAATCAGCTCGAAGATGTCGGCGTGC 1974182 Score = 87.8 bits (96), Expect = 3e-11 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 2070133 AACGCGTCGGCCAGGCCCTGCACGCCGACGCCCATCGGCCGGTGGCGCAGGTTCGAGTGC 2070192 ||||||||||| || || || || || ||||| || || ||||| |||| |||||||| | Sbjct 1974913 AACGCGTCGGCGAGACCTTGAACACCAACGCCGATGGGTCGGTGCCGCATGTTCGAGTTC 1974854 Query 2070193 CGGGCCTCGGGCACCGGGTAGTGGTTGATGTCGATCACGCGGTTGAGGTTG 2070243 |||||| | || ||||||| ||||| ||||| | |||||| | |||| Sbjct 1974853 TTGGCCTCTTGAACAGGGTAGTAGTTGACATCGATAATGCGGTTCAAGTTG 1974803 >seq4 Length=3119897 Score = 102 bits (112), Expect = 1e-15 Identities = 171/241 (71%), Gaps = 11/241 (5%) Strand=Plus/Minus Query 653642 CGCCAGCCCGAGGTGGGCGACAAACTGTCGTCGCGCCACGGGCAAAAGGGCACCGTGGGC 653701 ||||| |||||| | |||||||| | |||||||||||||| ||||| | ||| Sbjct 2564435 CGCCAACCCGAGCTCGGCGACAAGTTCAGCTCGCGCCACGGGCAGAAGGGTGTCTGCGGC 2564376 Query 653702 ---AGCGTGCGCTCGACCGAGGAAATGCCGTGGTCGCCGCGCGGGGGCGCCACGCCCGAC 653758 | ||||| ||| | ||||| ||||| | ||| || ||| || || ||| Sbjct 2564375 TTGATCGTGC-CTCAA--GAGGACATGCCCTTCTCGGA---CGACGGCATCAACCCAGAC 2564322 Query 653759 ATCGTCATCAACCCGCACGCCATCCCGTCGCGCATGACCATGGGCAAGATGATGGAGGCC 653818 ||| |||| |||||||||| | ||||||| || |||||| ||||||||||||||||| Sbjct 2564321 ATCATCATGAACCCGCACGGCTTCCCGTCCCGAATGACCGTGGGCAAGATGATGGAGTTG 2564262 Query 653819 CTCCTGGGCAAGG-TGGCCTGCCGCGAGGGCTACGTGGGCGACGGCACCCCGTTTGGCGG 653877 ||| ||||||| |||| || | ||||| | | | ||||||| | || ||||| Sbjct 2564261 CTCTCTGGCAAGGCTGGCTTGGTG-AAGGGCAAGTTTGAGTACGGCACAGCTTTCGGCGG 2564203 Query 653878 C 653878 | Sbjct 2564202 C 2564202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916244378883341