Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidiopsis_20lactophilus_20[genbank_20GCA_5F001599975.1_202016 -03-01] 19 sequences; 22,180,604 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq2 113 4e-20 seq1 105 6e-18 seq5 84.2 2e-11 >seq2 Length=4543988 Score = 113 bits (124), Expect = 4e-20 Identities = 120/156 (77%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 133507 CCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGT 133566 |||||||||||||||| ||| | || || |||||||||||||| |||||||| ||||||| Sbjct 1346990 CCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGT 1347049 Query 133567 CGGTGATCTTTTGCTTGAGCTGC-TCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 | |||||| ||||| | || || | || |||| | | || || || | ||||| | Sbjct 1347050 CCTGGATCTTGGCCTTGA-CAGCGTCGATCGAGTCGCTCGATTCGACTTCCAAGGTGATG 1347108 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 || || || |||| || || ||||| ||||||||| Sbjct 1347109 GTCTTCCCAGTCAAGGTCTTGACGAAGATCTGCATG 1347144 Score = 87.8 bits (96), Expect = 2e-12 Identities = 56/61 (92%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 133507 CCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGT 133566 |||||||||||||||| ||| ||||||| |||||||||||||| |||||||| ||||||| Sbjct 1346294 CCTCGAGCTGCTTGCCAGCGAAAATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGT 1346353 Query 133567 C 133567 | Sbjct 1346354 C 1346354 Score = 84.2 bits (92), Expect = 2e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 133507 CCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGT 133566 |||||||||||||||| ||| ||||||| ||||||||||| || |||||||| ||||||| Sbjct 1346642 CCTCGAGCTGCTTGCCAGCGAAAATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGT 1346701 Query 133567 C 133567 | Sbjct 1346702 C 1346702 >seq1 Length=5326569 Score = 105 bits (116), Expect = 6e-18 Identities = 186/267 (70%), Gaps = 17/267 (6%) Strand=Plus/Plus Query 120488 CAATGTACTCGCACATG-GACTGCGCGTTCATGCCCAGCAACGCCACCGGCAACGCCGAC 120546 ||||||||| || |||| | || ||||||||||| | | | || |||| || Sbjct 653695 CAATGTACTGGCGCATGAGGGTG-GCGTTCATGCCGATGAGGGAGACGGGCAGGGCGTCG 653753 Query 120547 GTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGCGAGCATAGTGTGGCCG 120606 || | |||||||||||||| || || ||||||| || ||||| | |||| | | Sbjct 653754 GTAAGGAACTCCTTCTCAATCTCGACGGCCTCCTCGATGATGGCCTTGACGGTGT--CTG 653811 Query 120607 GGCATCTTGTGTTCGATGCGCGTTCGGTAGTACA------GGCACGCAAAGTCCGTGTGC 120660 || || | ||| |||| | ||| | | | |||| |||||||| |||||| Sbjct 653812 GG-----TGGGGTCG--GCGCTTGAGGTGGGAGAAGAGGAGGCAGGCAAAGTCGGTGTGC 653864 Query 120661 AGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCATGATGCCTTTC 120720 |||||||||||||| || || ||||||||| || || ||||||||||||| ||| | Sbjct 653865 AGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGGCCGCGC 653924 Query 120721 GTCTTGATGTAGAATATGGCGGCAAAG 120747 |||||| |||| |||| || ||| Sbjct 653925 TTCTTGAGCCAGAAGATGGAAGCGAAG 653951 Score = 100 bits (110), Expect = 3e-16 Identities = 245/369 (66%), Gaps = 2/369 (1%) Strand=Plus/Minus Query 148327 ACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCG 148386 |||||||||||||||| ||||| | ||||| || || |||||| ||| |||| || Sbjct 1975224 ACTCGTTGTTGCCCAAGATCTGGGAGGTCGACGCGGTCGGCATGGGCGCAACCAACAAGC 1975165 Query 148387 AGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCG 148446 |||||||| |||| | || || ||| || |||| ||||| || | | Sbjct 1975164 TGTTGCGCAGGCCGCCGGCGATGATCTTCTCCTTGAGGCTATCCCACTCCCAAAGGGTGG 1975105 Query 148447 ACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGT 148506 || || ||| |||||||||| |||| || ||| | | || |||||||||| | Sbjct 1975104 TAGGGGTGACGCCCCACATGTCGAACTGAAGCTCGCCCCTGGACGCTGGGCTGCCCTGGA 1975045 Query 148507 ACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGT 148566 | | ||| || || | | || || ||| | | ||||||| ||| ||| || Sbjct 1975044 AGGTTGAGTAAGGGCCCTCTTCGATGGCGAGCTCGTTGGACACCTCGAGAGCGGCGTGGT 1974985 Query 148567 AAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGACTCG-CTTTCGTACGGCATA 148625 | || |||||| || ||| |||| || || | | || | | || | ||||| Sbjct 1974984 AGATGGTCTCGTGGATCTGCTTGTTCAGGAG-ACGGGCGGCGGGAGAGTCAAAAGGCATG 1974926 Query 148626 CGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTA 148685 |||||| || ||||||||||| || || || || || ||||| ||||| ||||| Sbjct 1974925 CGCAGCGCCATGAACGCGTCGGCGAGACCTTGAACACCAACGCCGATGGGTCGGTGCCGC 1974866 Query 148686 ATGTTGGAG 148694 ||||| ||| Sbjct 1974865 ATGTTCGAG 1974857 Score = 91.5 bits (100), Expect = 1e-13 Identities = 109/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||| || || | || || |||||||||||||| |||||||| |||||||| |||||| Sbjct 2644780 CTTTCCAGCRAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTT 2644721 Query 133577 TTGCTTGAGCTGC-TCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 ||||| | || || | || ||||| | ||| || || | ||||| ||| ||||||| Sbjct 2644720 CGCCTTGA-CGGCGTCGATCGAGTCGGAGCTCTCGACTTCCAAGGTGATGGTCTTGCCGG 2644662 Query 133636 TCAGAGTTTTTACGAAAATCTGCATG 133661 ||| || || || || || |||||| Sbjct 2644661 TCAAGGTCTTGACAAAGATTTGCATG 2644636 >seq5 Length=3070904 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 120639 CAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGT 120698 |||||| |||||||| ||||||||||| |||||||| || || ||||||||| || || Sbjct 1666900 CAGGCAGGCAAAGTCGGTGTGCAGGCCTTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGT 1666841 Query 120699 CAGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATAT 120737 |||||| ||||| | || | |||||| ||||||| Sbjct 1666840 CAGGCCCGGCATTAAACCGCGCTTCTTGAGCCAGAATAT 1666802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483420685187560