Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidiopsis_20lactophilus_20[genbank_20GCA_5F001599975.1_202016 -03-01] 19 sequences; 22,180,604 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1 131 2e-24 seq5 123 4e-22 seq4 100 4e-15 seq2 89.7 7e-12 >seq1 Length=5326569 Score = 131 bits (144), Expect = 2e-24 Identities = 167/227 (74%), Gaps = 11/227 (5%) Strand=Plus/Minus Query 1456003 CAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTC 1456062 |||||| || ||||||||||||||||| |||||| ||| ||||||| |||||||| Sbjct 654232 CAGATCATGATGGAAAACATCCACTCTGAGGTCTACTCCCTCTTGATCGATACCTACGTG 654173 Query 1456063 AAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGG 1456122 ||||| || || || ||||||| | | ||||| || | |||| | | | Sbjct 654172 CGCGACCCCATCCAGCGCAACAACCTCTTCAACTCGATCGAGACCATCCCGTGCATCAAG 654113 Query 1456123 AAAAAGGCCGACTGGGCGATGAAGTGGAT---CAACAAGGAGGGCCTCGACAC-TTTGCC 1456178 || |||||||||||||| | || ||||| | ||||||| || ||| |||| | Sbjct 654112 AAGAAGGCCGACTGGGCCCTCAACTGGATCGGCGACAAGGA------CGCCACTTTTGGC 654059 Query 1456179 GAGCGGCTCGTCGGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGG 1456224 ||||| ||||||| ||| |||| ||||||||||||||| ||||| || Sbjct 654058 GAGCGCCTCGTCGCCTTCGCCGCCGTCGAGGGCATCTTCTTCTCCGG 654012 Score = 114 bits (126), Expect = 2e-19 Identities = 119/154 (77%), Gaps = 4/154 (3%) Strand=Plus/Plus Query 260030 TGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCA--CACAAGGTGCGCG 260087 ||||| | ||||||||| |||| || ||||| || | || || ||||| | |||| Sbjct 1973922 TGCGCCCAGATCTCCAAGACGGCTGGTGGCATTGGCCT--CCACATCCACAACATCCGCG 1973979 Query 260088 CCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTC 260147 || | ||| ||||| | | |||||||||||| | || |||||| | ||||||||||| | Sbjct 1973980 CCACTGGCTCCTACATCGGCGGCACCAACGGCTACTCGAACGGCGTCGTGCCCATGCTCC 1974039 Query 260148 GCGTTTTTAACGACACGGCGCGCTACGTCGACCA 260181 |||| || ||| ||||||| |||||||| ||||| Sbjct 1974040 GCGTGTTCAACAACACGGCCCGCTACGTTGACCA 1974073 Score = 102 bits (112), Expect = 1e-15 Identities = 84/101 (83%), Gaps = 1/101 (1%) Strand=Plus/Minus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 ||||||| |||||||||||||| ||||| ||||| | | ||| | ||||| || | Sbjct 653794 ATCATCGAGGAGGCCGTCGAGATTGAGAAGGAGTTCCTTACCGACGCCCTGCCCGTCTCC 653735 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTG 1456623 ||||||||||||||||||||| |||||| |||||||||||| Sbjct 653734 CTCATCGGCATGAACGCCACC-CTCATGCGCCAGTACATTG 653695 Score = 100 bits (110), Expect = 4e-15 Identities = 134/184 (73%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 332926 GTTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGT-CGACCGGAGGG 332984 |||||| || | | || || || || |||| || | |||||||| |||| |||||| Sbjct 4523380 GTTGCACGCAAAGCAGAAGCGGGTGGTGTTGGAATAGATCTCCATGGTGCGAC-GGAGGG 4523322 Query 332985 CCTGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCC 333044 | || ||||| | ||||| | | |||||||||||||||||||||||||||||||||| | Sbjct 4523321 CTTGCTGGGCACCGGGCGTCATGGAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGGC 4523262 Query 333045 CGTGCGGCAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTCCA 333104 || ||||| || ||||| || | |||||| ||||| |||||||| | Sbjct 4523261 CGACGGGCAGGGTGACTTTTTTCTGGGAGAACGTCTTGATGCGGTTGCGAACGACGTCAA 4523202 Query 333105 CGCC 333108 ||| Sbjct 4523201 TGCC 4523198 >seq5 Length=3070904 Score = 123 bits (136), Expect = 4e-22 Identities = 218/311 (70%), Gaps = 5/311 (2%) Strand=Plus/Plus Query 1455714 GCGAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGC 1455773 ||||||| ||||||| || ||| ||||||| || || ||||||||| ||||| | Sbjct 1666089 GCGAGCCTCTGCTGCAAGAGGCGCCGGACCGCTTCGTGCTCTTCCCCATCACCTACCCGT 1666148 Query 1455774 GGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGAC 1455833 || ||| | ||| || | |||| ||||||||| ||||| || |||||| |||| Sbjct 1666149 CCATCTGGCGCTTCTAC-AAGACGGCCATGGCCTCCTTCTGGACGGCGGAGGAGATCGAT 1666207 Query 1455834 CTCGGCGC-CGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAA 1455892 || | | | |||| | | ||| ||| | || || ||||||||| ||||||| Sbjct 1666208 CT-GTCACACGACCTCGCCGACTTCCAAAAGCTCACCGCCGGCGAGCGCCACTTCATCAT 1666266 Query 1455893 GCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCC 1455952 |||||||||||| || |||||| || ||| ||| |||| |||||||||| || | Sbjct 1666267 CCACGTCCTCGCC-TTCTTCGCCTCCGCCGACGGCGTCGTCAACGAGAACCTGATCGAGC 1666325 Query 1455953 GCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT-CGCC 1456011 | || || ||||| ||| | ||||||| | | ||||| || |||||| | ||| Sbjct 1666326 GGTTCTCAAACGAGGTGCAAGCGGCAGAGGCCAGGTGCTTTTATGGTTTCCAGGTGCGCT 1666385 Query 1456012 ATCGAAAACAT 1456022 | ||||||| Sbjct 1666386 GGCCAAAACAT 1666396 >seq4 Length=3119897 Score = 100 bits (110), Expect = 4e-15 Identities = 179/255 (70%), Gaps = 11/255 (4%) Strand=Plus/Plus Query 1600499 TCGTCGACGGTGACGCCGCCAAAGGGCGTGCCGTCGCCCACATAGCCCTCGCGGCAGGCC 1600558 || ||||| || |||||| || | ||||||| | | | ||||| | || ||| Sbjct 2564188 TCTTCGACCTTGCTGCCGCCGAAAGCTGTGCCGTACTCAAACTTGCCCTT-CACCAAGCC 2564246 Query 1600559 A-CCTTGCCCAGGAGGGCCTCCATCATCTTGCCCATGGTCATGCGCGACGGGATGGCGTG 1600617 | ||||||| ||| ||||||||||||||||| |||||| || ||||||| | |||| Sbjct 2564247 AGCCTTGCCAGAGAGCAACTCCATCATCTTGCCCACGGTCATTCGGGACGGGAAGCCGTG 2564306 Query 1600618 CGGGTTGATCACAATGTCGGGCGTGGCACCGCCGCGAGGCGACCAGGGCATGTCCTCGGT 1600677 |||||| || | ||||| || || ||| || ||| ||||||||||||| | Sbjct 2564307 CGGGTTCATGATGATGTCTGGGTTGATGCCGTCG---TCCGAGAAGGGCATGTCCTC--T 2564361 Query 1600678 GGAGCGCACGCT---GCCCACGGTGCCCTTTTGGCCGTGGCGCGACGACAGTTTGTCGCC 1600734 ||| ||||| | ||| | ||||| || ||||||||||| | |||||||| Sbjct 2564362 TGAG-GCACGATCAAGCCGCAGACACCCTTCTGCCCGTGGCGCGAGCTGAACTTGTCGCC 2564420 Query 1600735 CACCTCGGGCTGGCG 1600749 | |||||| ||||| Sbjct 2564421 GAGCTCGGGTTGGCG 2564435 >seq2 Length=4543988 Score = 89.7 bits (98), Expect = 7e-12 Identities = 178/264 (67%), Gaps = 0/264 (0%) Strand=Plus/Plus Query 1818059 GAGGTCGCCCATGGTAAAGGGCGTCACGCGCTCGGGAAAGGTGAGCGTCTTGACGATCTC 1818118 |||| || | ||| | |||||||||| ||||| || |||| || | | |||| Sbjct 3532707 GAGGGCGGCAATGTTGTAGGGCGTCACCCGCTCCGGGTAGGTCAGGTTGCGGGCGATGGA 3532766 Query 1818119 ATAGGGCACGCCCACCTCGTCAATGTCAATCTCGGGGTCGGGGCTGATGACGGCGCGCGC 1818178 | ||| || || || | ||| | || || | ||||||| | ||||||| | || || Sbjct 3532767 CTTGGGGACACCGACTTGGTCGAGATCGATGTTGGGGTCGCCGGTGATGACCGTTCGGGC 3532826 Query 1818179 GGTAAAGTTGACGCGCTTGCCCATGCAATTGCCGCGGATCCTGCCCTCCTTGCCCTTGAA 1818238 || |||| ||||||||||||||| | ||||| || | ||| || |||||||| || | Sbjct 3532827 GGAGAAGTCGACGCGCTTGCCCATCAAGTTGCCTCGCAGCCTTCCTTCCTTGCCTTTTAG 3532886 Query 1818239 CCGCTCCACGAGGCCCTTGGTGGGCTTGCCCGACCGTTGGGTCGACTGCTTTTGGCCGCG 1818298 ||| | || | |||| | ||| ||| ||| ||| | | |||| ||||| | Sbjct 3532887 CCGGGCTCGGATGGACTTGATCGGCCGGCCAGACTTTTGCATGGCCTGCGGCTGGCCCGG 3532946 Query 1818299 GATGTCGTTGTTGTGGTAGGTGGC 1818322 || ||||| ||||||||| Sbjct 3532947 AATCGAGTTGTCCATGTAGGTGGC 3532970 Score = 86.0 bits (94), Expect = 9e-11 Identities = 100/133 (75%), Gaps = 3/133 (2%) Strand=Plus/Plus Query 333010 GTCGGCCTCGTCGAGGATGATGATCTTGTGGCGC-CCGTGCGGCAGATCAACCCTTT--T 333066 ||||||||||||||||||||||| |||| || | || || | ||| | | || | Sbjct 2476535 GTCGGCCTCGTCGAGGATGATGAGCTTGAAGCCCTCCTTGGAGGAGAAGACCTGCTTGGT 2476594 Query 333067 CGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTCCACGCCGCGCTCGTCCGACGCGTT 333126 |||||| || ||||| || || ||||| || | ||||||||||||||| ||||| Sbjct 2476595 CGAGGCAAAGTTCTTGATCTGCTCCCGGACGACCTCGATGCCGCGCTCGTCCGAGGCGTT 2476654 Query 333127 GAGTTCGAGCACG 333139 ||| ||||||||| Sbjct 2476655 GAGCTCGAGCACG 2476667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177809367415078