Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidiopsis_20lactophilus_20[genbank_20GCA_5F001599975.1_202016 -03-01] 19 sequences; 22,180,604 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1 114 1e-20 seq2 104 3e-17 >seq1 Length=5326569 Score = 114 bits (126), Expect = 1e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 53393 TGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGAACGTCCGTGCG 53452 || ||||| ||||||||| | | ||||| || || ||||| | ||| |||| || Sbjct 1973922 TGCGCCCAGATCTCCAAGACGGCTGGTGGCATTGGCCTCCACATCCACAACATCCGCGCC 1973981 Query 53453 AACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGC 53512 | ||| | ||| || || |||||| | | | || ||||||| ||||||||| Sbjct 1973982 ACTGGCTCCTACATCGGCGGCACCAACGGCTACTCGAACGGCGTCGTGCCCATGCTCCGC 1974041 Query 53513 GTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTC 53572 || ||||||||||||||||| ||||| |||| ||||| |||||| || | ||| Sbjct 1974042 GTGTTCAACAACACGGCCCGCTACGTTGACCAAGGTGGCAACAAGCGCCCCGGTGCTTTC 1974101 Query 53573 GCCATCTACCTCGAGCCGTGG 53593 ||||||||||||||||| ||| Sbjct 1974102 GCCATCTACCTCGAGCCATGG 1974122 Score = 95.1 bits (104), Expect = 1e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 53270 TACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCG 53329 ||||| || |||||| |||| || ||||||||||| || || || || ||| ||||| Sbjct 1973735 TACTTCACCCACGCCTCGCCCACTCTGTTCAACGCCGGCACTCCCCATCCCCAGCTGTCG 1973794 Query 53330 AGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGA 53379 |||||| |||| || |||||||| ||||| ||||| ||||||||||| Sbjct 1973795 TCTTGCTTCTTGGTCGCCATGAAGGAGGACTCCATCGATGGCATCTACGA 1973844 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||||| |||||| | || | || ||||| ||||| ||||||||||| | |||||| || Sbjct 1975152 GGCCTGCGCAACAGCTTGTTGGTTGCGCCCATGCCGACCGCGTCGACCTCCCAGATCTTG 1975211 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACAC 55566 |||||||||||| |||||||| ||||| Sbjct 1975212 GGCAACAACGAGTGCTTCGAGCCTTACAC 1975240 >seq2 Length=4543988 Score = 104 bits (114), Expect = 3e-17 Identities = 168/242 (69%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 152074 CGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTC 152133 || || || || || ||| ||| || || | ||||| |||||| | ||| || || || Sbjct 3452120 CGGGTGCCGAATTGGCCATTGGGGTCCAGCAAGTTGACGTTGTTCGAGCCAACAAAGCTC 3452061 Query 152134 TGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGC 152193 || |||| || || ||||| ||| | ||||||||||| || |||| ||| Sbjct 3452060 TGCGCCAGGCCGACGATGGTGCCAGCCAGCGAAGTCTCACCGTGGTGGTATGCCGAGTGC 3452001 Query 152194 TCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGA 152253 || ||||||||||| ||||||| |||||||| || ||| || | || || ||||| Sbjct 3452000 TCAGCGATGTATCCGACCAACTGGGCCACCTTAATCTCCTTCTTAAGCTTGCGCTTGAAG 3451941 Query 152254 CAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAA 152313 ||| || | | |||||||||||| | || || ||||| | || ||| ||||| Sbjct 3451940 CAGCCGAAGAGAACCTTGCGCTGGCCAGTCTTGAAGCCGTCGATGACCGAAGGGATCGAG 3451881 Query 152314 CG 152315 || Sbjct 3451880 CG 3451879 Score = 82.4 bits (90), Expect = 8e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 117350 CGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTT 117409 || || |||||||| ||| | || |||| | ||| | |||||| | ||| |||||| | Sbjct 3452120 CGGGTGCCGAATTGGCCATTGGGGTCCAGCAAGTTGACGTTGTTCGAGCCAACAAAGCTC 3452061 Query 117410 TGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGC 117469 || |||| | ||| || || || || | |||||| ||||| || |||| ||| Sbjct 3452060 TGCGCCAGGCCGACGATGGTGCCAGCCAGCGAAGTCTCACCGTGGTGGTATGCCGAGTGC 3452001 Query 117470 TCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGG 117529 || || | ||| || ||| ||| |||||||| || || | | || || ||||| | Sbjct 3452000 TCAGCGATGTATCCGACCAACTGGGCCACCTTAATCTCCTTCTTAAGCTTGCGCTTGAAG 3451941 Query 117530 CAGGCATAAATCACCTTGCGCTG 117552 ||| | | | ||||||||||| Sbjct 3451940 CAGCCGAAGAGAACCTTGCGCTG 3451918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215870036200