Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidiopsis_20lactophilus_20[genbank_20GCA_5F001599975.1_202016 -03-01] 19 sequences; 22,180,604 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2 107 2e-18 seq1 96.9 4e-15 >seq2 Length=4543988 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31984 GACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCTGTCG 32043 |||||| ||||| || ||||||||||| | | || |||| ||||| || || | Sbjct 3451900 GACGGCTTCAAGACTGGCCAGCGCAAGGTTCTCTTCGGCTGCTTCAAGCGCAAGCTTAAG 3451959 Query 32044 AGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCAC 32103 | || || |||||||| ||| || || ||| | || ||||| |||| || |||||| Sbjct 3451960 AAGGAGATTAAGGTGGCCCAGTTGGTCGGATACATCGCTGAGCACTCGGCATACCACCAC 3452019 Query 32104 GGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAAT 32163 || ||| | ||||| |||||||| ||| ||| || |||| |||||| || | || Sbjct 3452020 GGTGAGACTTCGCTGGCTGGCACCATCGTCGGCCTGGCGCAGAGCTTTGTTGGCTCGAAC 3452079 Query 32164 AACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGC 32210 ||| | ||||| || || || ||| || || || ||||| |||| Sbjct 3452080 AACGTCAACTTGCTGGACCCCAATGGCCAATTCGGCACCCGAATCGC 3452126 Score = 89.7 bits (98), Expect = 6e-13 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | || || ||||| || || | || || || || | Sbjct 1347143 ATGCAGATCTTCGTCAAGACCTTGACTGGGAAGACCATCACCTTGGAAGTCGAATCGAGC 1347084 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || || | | | ||||| || || |||||||||||||| || || || |||||| Sbjct 1347083 GACTCGATCGACGCTGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 1347024 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGG 27559 ||||| || || || ||||| ||||| ||||||| Sbjct 1347023 CAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGG 1346990 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 27485 AGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTG 27544 |||| |||||||| ||||||||||| || || || ||||||||||| | || || || | Sbjct 1346019 AGGCCAAAATTCAAGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCTTGATCTTCGCCG 1345960 Query 27545 GTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGG 27595 | ||||| |||||||| | || ||| | | ||||| || |||| |||| Sbjct 1345959 GCAAGCAGCTCGAGGACGGCCGGACCTTGTCCGACTACAACATCCAGAAGG 1345909 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 27485 AGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTG 27544 |||| ||||| || ||||||||||| || || || ||||||||||| || ||||| |||| Sbjct 1346368 AGGCCAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCAGCAGCGCCTCATTTTCGCTG 1346309 Query 27545 GTAAGCAACTCGAGG 27559 | ||||| ||||||| Sbjct 1346308 GCAAGCAGCTCGAGG 1346294 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 27485 AGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTG 27544 |||| ||||| || ||||||||||| || || || ||||||||||| || ||||| |||| Sbjct 1346716 AGGCCAAAATCCAAGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATTTTCGCTG 1346657 Query 27545 GTAAGCAACTCGAGG 27559 | ||||| ||||||| Sbjct 1346656 GCAAGCAGCTCGAGG 1346642 >seq1 Length=5326569 Score = 96.9 bits (106), Expect = 4e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 27485 AGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTG 27544 |||| || ||||||||||||||||| ||||| || ||||| ||||| || || ||||||| Sbjct 2644426 AGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAACAGCGCCTCATCTTTGCTG 2644485 Query 27545 GTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGG 27595 | || ||||||||||| | | ||||| | ||||| || | ||||||| Sbjct 2644486 GCAAACAACTCGAGGACGGCAGGACCCTGTCTGACTACAACATTCAAAAGG 2644536 Score = 87.8 bits (96), Expect = 2e-12 Identities = 201/300 (67%), Gaps = 2/300 (1%) Strand=Plus/Minus Query 80539 CCCCACATGTCGTGCTGCAAGAT-GCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTA 80597 |||||||||||| ||| ||| | |||| ||||| || ||| ||| || ||| Sbjct 1975093 CCCCACATGTCGAACTG-AAGCTCGCCCCTGGACGCTGGGCTGCCCTGGAAGGTTGAGTA 1975035 Query 80598 CGGGCCCTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTC 80657 |||||||| |||| ||||| ||| || || || ||||| || ||| ||| Sbjct 1975034 AGGGCCCTCTTCGATGGCGAGCTCGTTGGACACCTCGAGAGCGGCGTGGTAGATGGTCTC 1974975 Query 80658 AAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCAT 80717 || |||||||| || || || ||| || | || || || | ||| Sbjct 1974974 GTGGATCTGCTTGTTCAGGAGACGGGCGGCGGGAGAGTCAAAAGGCATGCGCAGCGCCAT 1974915 Query 80718 GAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCG 80777 |||| |||| || || || ||||| || | | |||| || ||||| ||| ||||||| Sbjct 1974914 GAACGCGTCGGCGAGACCTTGAACACCAACGCCGATGGGTCGGTGCCGCATGTTCGAGTT 1974855 Query 80778 CTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAAC 80837 || |||||| ||| ||||| |||| |||||| | |||||||| |||||| || || Sbjct 1974854 CTTGGCCTCTTGAACAGGGTAGTAGTTGACATCGATAATGCGGTTCAAGTTGCGGGTGAC 1974795 Score = 86.0 bits (94), Expect = 7e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 ||||| || || |||||||||||||| || || || |||||||| || || || |||||| Sbjct 2645465 AAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCTGACCAGCAACGCCTGATCTTTGCT 2645524 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGG 27595 || ||||| | ||||||| | ||||| | ||||| || |||| |||| Sbjct 2645525 GGCAAGCAGTTGGAGGATGGCAGGACCCTGTCCGACTACAACATCCAGAAGG 2645576 Score = 82.4 bits (90), Expect = 9e-11 Identities = 117/165 (71%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 80052 CATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAACTGAGCTTCGCAAG 80111 |||||| ||||| ||||||||||||||| ||| | |||||| || | || | ||||| Sbjct 1975640 CATGCCAGTCTTAAGGCCCTTCTTCCAGGAGTAAAAGTGCATCGAGGTCAGTTGCGCAAA 1975581 Query 80112 TGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATGAAAGCCCCACGATC 80171 || ||| | || | |||||||| ||| || ||||||||||| ||||| || Sbjct 1975580 GGTCGGGCTGGACAAGTGGATGTTCAAGCTCTGGCTTTGGCAGATGAAAGCGCCACGGTC 1975521 Query 80172 TGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGT 80216 || | ||| || || || | |||||| || ||||| || || Sbjct 1975520 GGCGGACATGTCGATGATGGCCTTTTGGCTGATCTCCCAGACCGT 1975476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310264551280